Search results

Incorrect k-mer profiles and assembly sizes - parameter settings have no effect

Status: Open.

#929 In chhylp123/hifiasm;

· marievalerie opened on Jun 19, 2026

Very high duplicated BUSCOs (87.1%) in a hifiasm -l3 primary assembly: residual haplotigs or true biological duplicates?

Status: Open.

#928 In chhylp123/hifiasm;

· haofeiteng97-hue opened on Jun 19, 2026

HiC usage issue #613 followup -- Makefile dependencies

Status: Open.

#927 In chhylp123/hifiasm;

· jbh-cas opened on Jun 11, 2026

Extreme memory usage (~>1TB) when assembling 15Gb wheat genome with 50kb ONT ultra-long reads (~20X coverage)

Status: Open.

#926 In chhylp123/hifiasm;

· wlhCNU opened on Jun 11, 2026

Assertion `xe == xk && ye == yk && e_tot == 0' failed

Status: Open.

#925 In chhylp123/hifiasm;

· YingChen94 opened on Jun 5, 2026

Large genome assembly (~30 Gb) fails due to memory requirements; prospects for distributed-memory support?

Status: Open.

#924 In chhylp123/hifiasm;

· DIPLOMICS-SA opened on Jun 3, 2026

Advice on highly imbalanced haplotypes in a large repeat-rich genome assembly

Status: Open.

#922 In chhylp123/hifiasm;

· RickZ42 opened on May 12, 2026

ONT ultra-long (200 kb) + HiFi （last data）assembly running for nearly 200 hours without finishing

Status: Open.

#921 In chhylp123/hifiasm;

· longwison opened on May 9, 2026

Which options/data types need to be specified when running hifiasm with --bin-only?

Status: Open.

#920 In chhylp123/hifiasm;

· amytims opened on May 7, 2026

Does -l0 affect the primary contig assembly (p_ctg) when --h1 and --h2 are provided?

Status: Open.

#919 In chhylp123/hifiasm;

· hungweichen0327 opened on May 6, 2026

How to skip built-in error correction step?

Status: Open.

#918 In chhylp123/hifiasm;

· Jung19911124 opened on Apr 27, 2026

Very long gaps (150 kb and 400 kb) in haplotigs after assembly with --ont using ONT + Hi‑C reads

Status: Open.

#917 In chhylp123/hifiasm;

· Tong-yx opened on Apr 22, 2026