Does -l0 affect the primary contig assembly (p_ctg) when --h1 and --h2 are provided?

[hungweichen0327]

Dear @chhylp123 @lh3 @molecules ,

Thank you for developing and maintaining hifiasm.

I would like to ask a question about the -l0 option when using Hi-C phasing information.

If I run hifiasm with --h1 and --h2, would adding or omitting -l0 affect the resulting primary contig assembly (p_ctg.fasta)?

In other words, when --h1 and --h2 are provided, does -l0 only affect the haplotype-resolved outputs, or can it also change the primary contig output?

Thank you very much for your help.

Best regards,
Hung-Wei Chen