Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016
Distinguishing between generic and experiment-specific gene expression signals.
A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
Investigating the functional relationship between P. aeruginosa core and accessory genes.
ARVIA: Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa
Bioinformatics Workshop 1 for BM327 Microbiology
To explore the use of latent space transformations using pseudomonas transcriptomic data.
Studying the sex differences in the immune response of plasmacytoid dendritic cells (pDCs) under different treatment conditions.
Phylogenomics of MDR Pseudomonas aeruginosa ST111: convergent OprD loss and mutual exclusivity with blaVIM-2
An aggregate-level simulation tool for Pseudomonas aeruginosa that captures both aggregate and cell-level behavior. My contributions are combined with contributions of Michael J Sweeney and Sarah Sundius.
A comprehensive pan-immunophagomic analysis of Pseudomonas aeruginosa, characterizing CRISPR-Cas arrays, prophage integrations, and innate bacterial defense repertoires across diverse clinical isolates.
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