VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.

Tool for generating influenza A virus genome sequences from FASTQ data

Genome ANnotator for inFLUenza viruses

A GLUE project for influenzaviruses

Shiny App: Project CovFlu - A Comparative Exploration of Covid-19 and Influenza Demographics in the U.S.

GisAids EpiFlu(influenza virus database) Downloader

End-to-end host–virus RNA-seq analysis of Influenza A infection.

A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.

Bioinformatics tool for inFLUenza REassortments Detection, including zoonotic segments.

Code repository associated with Brierley et al., 'An AI for AI..'

inFLuenza Amino acid Substitution Caller

Implementación computacional de cebadores y sondas (HA, NP y M1-M2) de Influenza A H1N1 para RT-PCR // Computational implementation of primers and probes (HA, NP, and M1-M2) for Influenza A H1N1 for RT-PCR.

MK Flu-Pipe Nextflow is the Nextflow DSL2 implementation of the MK Flu-Pipe Influenza workflow.