aucell

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Faster, lower-memory Rust rewrite of the SCENIC and SCENIC+ analysis stack: GRN, AUCell, cisTarget, topics, peak-to-gene links, and eRegulons.

rust bioinformatics scrna-seq atac-seq single-cell gene-regulatory-network pyo3 scenic scatac-seq pyscenic aucell regulon scenicplus

Convert your STDeconvolve-generated and EnrichR-decoded topics into Seurat spatial clustering information via AUCell

clustering topics 10x-genomics 10xgenomics enrichr visium aucell stdeconvolve visium-analysis

SeuratAUCellTools provides convenience wrappers for running AUCell-based gene set scoring on Seurat objects.

scrna-seq seurat gene-signature aucell scrnaseq-analysis module-score

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