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TE Insertion Merging and SVLEN

Status: Open.

#157 In parklab/xTea;

· grennfp opened on Jun 8, 2026

Error when calling pseudogenes from long reads data

Status: Open.

#155 In parklab/xTea;

· MartinaCasc opened on Apr 15, 2026

What are the steps to run xTea

Status: Open.

#154 In parklab/xTea;

· EugeneVlg02 opened on Mar 26, 2026

xTea gets randomly stuck but doesn't crash

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#150 In parklab/xTea;

· hcastel opened on Feb 18, 2026

Question about --postF --postFmosaic failure after --sibling (TypeError: write() argument must be str, not int)

Status: Open.

#148 In parklab/xTea;

· UnlimitedW opened on Jan 31, 2026

all vcf records annotated as INS:ME:SVAwhen using a custom library

bugSomething isn't workingSomething isn't working

Status: Open.

#141 In parklab/xTea;

· jazberna1 opened on Jul 9, 2025

ghost_reads.fa.separate_flanking.fa': No such file or directory

Status: Open.

#127 In parklab/xTea;

· ucsfpan opened on Sep 10, 2024

xTea_long getting stuck, no errors, during wtpoa-cns, running HG38

Status: Open.

#106 In parklab/xTea;

· vaksmaz opened on Apr 22, 2024

Sporadic inconsistent errors with xtea_long

Status: Open.

#93 In parklab/xTea;

· yuliamostovoy opened on Oct 31, 2023

pseudogenes insertion from pacbio bam

Status: Open.

#44 In parklab/xTea;

· AhmedArslan opened on Mar 28, 2022

VCF output for xtea_long?

enhancementNew feature or requestNew feature or request

long reads

Status: Open.

#29 In parklab/xTea;

· eyalmpeer opened on Dec 15, 2021

For SLURM your default email address should change

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In parklab/xTea;

· Phillip-a-richmond opened on Oct 4, 2021