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    13 repositories

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •80•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • x-lab.github.io

      Public
      X-Lab website
      SCSS
      •1•0•0•1•Updated Sep 3, 2025Sep 3, 2025

    • linked-read-cdiff

      Public
      Pan-genomics of C difficile with linked-read technollgy
      denovo-assemblylinked-readsc-difficile
      denovo-assemblylinked-readsc-difficilebacterial-genomicspan-genomicsbacterial-pathogen
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•1•0•Updated Jul 29, 2025Jul 29, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      TypeScript
      •
      MIT License
      •55•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • Awesome-LLMs-meet-genomes

      Public
      Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in genomes.
      MIT License
      •6•0•0•0•Updated May 23, 2025May 23, 2025

    • clinical-filtering

      Public
      Python
      •2•0•0•0•Updated May 15, 2025May 15, 2025

    • gnomad_qc

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •31•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • samplyzer

      Public
      An R package and Web App for efficient quality control of human whole-genome and whole-exome datasets
      bioinformaticsrgenomics
      bioinformaticsrgenomicsgeneticsvcf
      R
      •
      MIT License
      •0•0•31•9•Updated Mar 5, 2024Mar 5, 2024

    • loftee

      Public
      Perl
      •
      MIT License
      •56•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • GAEMR

      Public
      Genome Assembly Evaluation, Metrics and Reporting
      Python
      •
      GNU General Public License v2.0
      •3•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • cookiecutter-pypackage

      Public
      Cookiecutter template for a poetry-managed Python package.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1.8k•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • fungal-wdl

      Public
      Broad fungal method repository
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Oct 20, 2020Oct 20, 2020

    • gnomad-sv-pipeline

      Public
      Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)
      R
      •
      MIT License
      •15•0•0•0•Updated Jun 19, 2020Jun 19, 2020
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