Repositories list

• circrna_detection

  Public
  circs_snake : a snakemake-based circRNA detection workflow

  rna-seqrnacircular+ 2

  rna-seqrnacircularrna-seq-pipelinernaseq-pipeline

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• BulkRNASeqGUI

  Public
  A shiny / TCC-GUI based application for users RNASeq data analysis / exploratory plotting

  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 2, 2026Jun 2, 2026

• bcl2fastq2_Pipeline

  Public
  A snakemake-based workflow for converting Illumina's bcl files to fastq files with the option of further downstream analysis (using FastQC, STAR+RSeQC, cutadapt…

  Python

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• pacbio_variants

  Public
  Long Read Human first SNP, SV, Phasing and more, powered by Snakemake

  snakemakeannotationpacbio+ 5

  snakemakeannotationpacbiotandem-repeatssnp-genotypingminimap2whatshapstructural-variation-calling

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• deep_snake

  Public
  deep_snake - snakemake-based deepconsensus (Pacbio SequelII subreads - to deepconsensus.fastq)

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 11, 2024Jul 11, 2024

• scRNAseq_Pipeline

  Public archive
  A snakemake- and seurat-based scRNA-seq analysis pipeline.

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 5, 2022Jul 5, 2022

• BNG_nanotatoR

  Public archive
  A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

  rannotationoptical+ 4

  rannotationopticalgenome-analysisstructural-variationsmapbionano

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 30, 2021Sep 30, 2021