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    18 repositories

    • varvis-download

      Public
      A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory speci…
      apiclinode
      apiclinodebioinformaticsauthenticationgenomicsproxy-supportdata-downloadvarvis
      JavaScript
      •
      GNU General Public License v3.0
      •0•11•2•6•Updated Jun 22, 2026Jun 22, 2026

    • varvis-connector

      Public
      Python package and CLI for data retrieval from Varvis SaaS Platform API.
      apicliclient
      apicliclientbioinformaticsvarvis
      Python
      •
      GNU General Public License v3.0
      •0•8•4•0•Updated Jun 10, 2026Jun 10, 2026

    • action-gh-release

      Public
      📦 :octocat: GitHub Action for creating GitHub Releases
      TypeScript
      •
      MIT License
      •629•0•0•0•Updated May 29, 2026May 29, 2026

    • bedrock-chat

      Public
      AWS-native chatbot using Bedrock
      TypeScript
      •
      MIT No Attribution
      •531•0•0•0•Updated May 29, 2026May 29, 2026

    • score-assemblies

      Public
      Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
      Python
      •
      GNU General Public License v3.0
      •1•28•0•0•Updated May 7, 2026May 7, 2026

    • ont-assembly-snake

      Public
      Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
      Python
      •
      GNU General Public License v3.0
      •3•29•0•0•Updated May 7, 2026May 7, 2026

    • TBProfiler

      Public
      Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
      Python
      •
      GNU General Public License v3.0
      •46•0•0•0•Updated Feb 26, 2026Feb 26, 2026

    • action-shellcheck

      Public
      GitHub action for ShellCheck.
      Shell
      •
      MIT License
      •79•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • LB-tbdb

      Public
      Standard database for the TBProfiler tool
      Python
      •
      GNU Lesser General Public License v3.0
      •18•2•0•0•Updated Oct 10, 2025Oct 10, 2025

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      JavaScript
      •
      GNU General Public License v3.0
      •671•2•0•0•Updated Sep 8, 2025Sep 8, 2025

    • multiqc-test-data

      Public
      Test data for MultiQC.
      HTML
      •
      MIT License
      •160•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • setup-gh

      Public
      👨‍💻 Install & configure the GitHub CLI (gh) in your GitHub Actions runner
      TypeScript
      •
      MIT License
      •4•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • chatgpt-mattermost-bot.fork

      Public archive
      A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.
      TypeScript
      •
      MIT License
      •57•3•0•0•Updated Feb 21, 2025Feb 21, 2025

    • simple_baserow_api

      Public archive
      A simple python wrapper for the baserow API
      Python
      •
      The Unlicense
      •3•3•0•0•Updated Feb 20, 2025Feb 20, 2025

    • bedrock-claude-chat

      Public
      AWS-native chatbot using Bedrock + Claude (+Mistral)
      TypeScript
      •
      MIT No Attribution
      •531•2•0•0•Updated Nov 28, 2024Nov 28, 2024

    • baserowapi

      Public archive
      python package for baserow
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Aug 25, 2024Aug 25, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •4k•2•0•0•Updated Apr 5, 2023Apr 5, 2023

    • LB-ncov2019-artic-nf

      Public
      A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
      Nextflow
      •
      GNU Affero General Public License v3.0
      •87•2•0•0•Updated Mar 14, 2022Mar 14, 2022
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