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Parser does not report which file error happens in

Status: Open.

#776 In marrink-lab/vermouth-martinize;

· aster31 opened on Jun 8, 2026

CIF parser not handling alternate conformations correctly

Status: Open.

#769 In marrink-lab/vermouth-martinize;

· csbrasnett opened on May 8, 2026

Merge Chain drops molecule meta attributes

Status: Open.

#768 In marrink-lab/vermouth-martinize;

· fgrunewald opened on May 5, 2026

Virtual site position/naming in PDB file

Status: Open.

#761 In marrink-lab/vermouth-martinize;

· thomasmulvaney opened on Mar 27, 2026

Missing angles, dihedrals, and improper dihedrals when generating 20-mer homo-CYSd using martinize2

Status: Open.

#760 In marrink-lab/vermouth-martinize;

· jwang227 opened on Mar 2, 2026

Separate selectors in dssp code between -dssp and -ss

Status: Open.

#757 In marrink-lab/vermouth-martinize;

· pckroon opened on Feb 19, 2026

cysp (palimotylated cysteine)

Status: Open.

#754 In marrink-lab/vermouth-martinize;

· alexsodt opened on Feb 8, 2026

GoModel VS beads built on pre-existing VS beads can cause MD engine issues.

Status: Open.

#750 In marrink-lab/vermouth-martinize;

· Lp0lp opened on Dec 10, 2025

Vermouth 0.15.0 issue when martinizing multimeric proteins

Status: Open.

#746 In marrink-lab/vermouth-martinize;

· ljstarke opened on Nov 24, 2025

Unable to allocate memory for an array with shape

Status: Open.

#743 In marrink-lab/vermouth-martinize;

· jochuan opened on Nov 17, 2025

Martinize2 fails on C-terminus canonicalization via KeyError due to dropped OXT atom on ARG 340

Status: Open.

#741 In marrink-lab/vermouth-martinize;

· Kostalab opened on Oct 30, 2025

Make EN, Go, waterbias and scFix default values model dependent.

Status: Open.

#737 In marrink-lab/vermouth-martinize;

· Lp0lp opened on Oct 10, 2025