feat(cloud): add setup-cloud.sh and document root-only cloud setups in README#617
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…PU setup in README
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Resolves #396. Autonomous Claude Code runs require the --dangerously-skip-permissions flag, which is blocked by Claude Code when running with root privileges. Since cloud providers (RunPod, Lambda, etc.) run as root by default, this blocks the autonomous loop. This PR adds a setup-cloud.sh script that automatically configures a non-root researcher user, copies workspace & cache directories, and sets git safe.directory. It also documents this workaround, fallback environment variable sweeping, and evaluation time constraints in the README.