Analysis code accompanying
This repository contains the code to reproduce the analysis of transcriptional signatures of mast cells in public breast cancer cohorts, as described below.
Data source: cBioPortal
Analysis script: analysis/METABRIC.Rmd
Data source: GDC
Analysis script: analysis/TCGA-BRCA.Rmd
Data source: CELLxGENE
Analysis script: analysis/scRNAseq.Rmd
Paper figures can be reproduced from the results by running analysis/Figures.Rmd.
Analyses were performed in R 4.5.1.