Reproducing RNA Seq Analysis

Original Study: Adaptive laboratory evolution of native methanol assimilation in Saccharomyces cerevisiae

DOI: https://doi.org/10.1038/s41467-020-19390-9

Overview

This project aims to replicate the analysis from Espinosa et al., (2020) while adapting methods to ensure reproducibility. The study involves processing RNA-sequences data through alignment, counts, performing differential gene expression analysis and conducting gene ontology and pathway enrichment analysis.

Repository Structure

• 7BBG2_GRP10.Rmd
  Main R Markdown file containing the analysis code and accompanying documentation.

• outputs/
  Directory containing the outputs of the analysis, such as processed data files, statistical results, and final datasets.

• README.md
  This file provides an overview of the repository structure and details about the project.

• figures/
  Directory for plots and visualizations generated during the analysis, including any figures used in the final report.