Refactoring

[jenniferxu1101]

1. Helper Functions:
   • HelperFunction.R
   • Outcome models: SensIAT_sim_outcome_modeler_mave.R, SIDR_Ravinew.R, singleindexmodelfunctions.R, SIDRnew.R
2. Main estimation functions:
   • est_s_t_y.R (this is the main one)
   • est_exchange.R
3. Data analysis codes that reproduce all plots in the paper:
   • data_analysis.R
4. Simulate data and use simulated data for estimation:
   • simulation.R

[github-actions]

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[gvegayon]

@jenniferxu1101, there are some warnings that we need to address, but I think it's OK to merge now. I will create an issue so we can deal with it after merging this version.

  Warning: replacing previous import ‘dplyr::count’ by ‘matrixStats::count’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten_lgl’ by ‘rlang::flatten_lgl’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::splice’ by ‘rlang::splice’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten_chr’ by ‘rlang::flatten_chr’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten_raw’ by ‘rlang::flatten_raw’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘assertthat::has_name’ by ‘rlang::has_name’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten’ by ‘rlang::flatten’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten_dbl’ by ‘rlang::flatten_dbl’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::invoke’ by ‘rlang::invoke’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘purrr::flatten_int’ by ‘rlang::flatten_int’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘betareg::predict’ by ‘stats::predict’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘dplyr::lag’ by ‘stats::lag’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘betareg::fitted’ by ‘stats::fitted’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘dplyr::filter’ by ‘stats::filter’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘Rcpp::.DollarNames’ by ‘utils::.DollarNames’ when loading ‘comprehensivecohort’
  Warning: replacing previous import ‘Rcpp::prompt’ by ‘utils::prompt’ when loading ‘comprehensivecohort’

Thanks!