复现 Lake et al., Nature 2023 — An atlas of healthy and injured cell states and niches in the human kidney 的论文图表。
| 路径 | 说明 |
|---|---|
kidney_atlas_reproduction.ipynb |
唯一 Colab notebook，包含全部复现代码（分模块） |
figures/ |
复现产出图 |
requirements.txt |
Python 依赖 |
- 点击上方 Open in Colab
- Runtime → Run all（或按模块依次运行）
- 在 notebook「模块 1」中配置数据路径（Google Drive 或本地上传）
| 来源 | 链接 |
|---|---|
| KPMP Atlas | https://www.kpmp.org/doi-collection/10-48698-3z31-8924 |
| CZ CELLxGENE | https://cellxgene.cziscience.com/ |
| CAP | https://celltype.info/project/588 |
| 原始代码 | https://github.com/KPMP/Cell-State-Atlas-2022 |
@article{lake2023atlas,
title={An atlas of healthy and injured cell states and niches in the human kidney},
author={Lake, Blue B and others},
journal={Nature},
volume={619},
pages={585--594},
year={2023},
doi={10.1038/s41586-023-05769-3}
}MIT