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Change assembly name in build-index: GRCm38 -> mm10

Status: Open.

#1303 In AlexsLemonade/scpca-nf;

· sjspielman opened on Jun 4, 2026

Change default sample type term for mouse

Status: Open.

#1290 In AlexsLemonade/scpca-nf;

· sjspielman opened on May 14, 2026

Make compatible with strict syntax

Status: Open.

#1279 In AlexsLemonade/scpca-nf;

· jashapiro opened on May 4, 2026

[BUG] file() called with null arg

bugSomething isn't workingSomething isn't working

Status: Open.

#1273 In AlexsLemonade/scpca-nf;

· jashapiro opened on Apr 22, 2026

Add GPU support for CellAssign

Status: Open.

#1270 In AlexsLemonade/scpca-nf;

· jashapiro opened on Apr 17, 2026

[BUG] _metrics.json is missing alevin-fry version info

bugSomething isn't workingSomething isn't working

Status: Open.

#1269 In AlexsLemonade/scpca-nf;

· jashapiro opened on Apr 17, 2026

Be more permissive with file name checks

Status: Open.

#1267 In AlexsLemonade/scpca-nf;

· sjspielman opened on Apr 15, 2026

Consider updating workflow when there are too few cells for celltyping

Status: Open.

#1265 In AlexsLemonade/scpca-nf;

· sjspielman opened on Apr 13, 2026

Update parsing line for new flex probe versions

Status: Open.

#1263 In AlexsLemonade/scpca-nf;

· sjspielman opened on Apr 9, 2026

Plan for cell typing mouse samples

Status: Open.

#1262 In AlexsLemonade/scpca-nf;

· sjspielman opened on Apr 8, 2026

Add new profile for workflow testing data

Status: Open.

#1252 In AlexsLemonade/scpca-nf;

· sjspielman opened on Mar 30, 2026

Update example metadata to be strictly examples

Status: Open.

#1251 In AlexsLemonade/scpca-nf;

· sjspielman opened on Mar 30, 2026