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error output ch fix
1 parent 295b1dc commit 0d64669

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Lines changed: 2 additions & 2 deletions

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modules/format-checks.nf

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -105,10 +105,10 @@ workflow format_checks {
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check_anndata(anndata_format_ch, anndata_format_reference_file)
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// collect all error files and concatenate to print to a formatting errors output file
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error_input_ch = check_sce.out
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error_output_ch = check_sce.out
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.mix(check_anndata.out) // mix with the anndata error files
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error_files_ch = error_input_ch
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error_files_ch = error_output_ch
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.collect{ meta, error_file -> error_file } // collect into a list of just the error files
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compile_errors(error_files_ch)

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