system_test_harmonization #14
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| name: system_test_harmonization | |
| on: | |
| schedule: | |
| - cron: "0 4 * * 1" #Run Monday at 4 UTC | |
| workflow_dispatch: {} | |
| jobs: | |
| lead_variants: | |
| timeout-minutes: 600 | |
| name: Run Harmonization | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v4 | |
| - uses: prefix-dev/setup-pixi@v0.9.2 | |
| name: Setup Pixi Environment | |
| with: | |
| pixi-version: v0.55.0 | |
| cache: true | |
| - name: Run harmonization integration test | |
| run: pixi r python -m pytest -s test_mecfs_bio/system/test_harmonize_drop_ambiguous.py # run harmonization on Decode-ME data | |