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    25 repositories

    • lobster

      Public
      Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
      biologyprotein-sequencesplm
      biologyprotein-sequencesplmbioml
      Python
      •
      Apache License 2.0
      •34•163•19•11•Updated Jul 1, 2026Jul 1, 2026

    • StrainRelief

      Public
      Python
      •
      Apache License 2.0
      •5•35•1•2•Updated Jun 17, 2026Jun 17, 2026

    • jamun

      Public
      Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles
      molecular-dynamics-simulationgenerative-modelsmolecular-modeling
      molecular-dynamics-simulationgenerative-modelsmolecular-modelingdiffusion-models
      Python
      •
      Apache License 2.0
      •3•20•0•2•Updated May 16, 2026May 16, 2026

    • holo-bench

      Public
      Benchmark for Biophysical Sequence Optimization Algorithms
      machine-learningblack-box-optimizationprotein-design
      machine-learningblack-box-optimizationprotein-design
      Python
      •
      MIT License
      •6•23•1•1•Updated Apr 15, 2026Apr 15, 2026

    • synapse

      Public
      Graph neural network for modeling multispecific antibody functional data
      Python
      •
      Apache License 2.0
      •1•14•0•0•Updated Feb 2, 2026Feb 2, 2026

    • ibex

      Public
      Antibody structure prediction
      Python
      •
      Apache License 2.0
      •3•37•0•0•Updated Dec 16, 2025Dec 16, 2025

    • igloo

      Public
      Tokenizing Loops of Antibodies
      Jupyter Notebook
      •
      Apache License 2.0
      •8•35•0•0•Updated Nov 23, 2025Nov 23, 2025

    • funcbind

      Public
      Unified all-atom structure-conditioned molecule generation
      Python
      •
      Apache License 2.0
      •3•20•0•0•Updated Nov 21, 2025Nov 21, 2025

    • e3tools

      Public
      Building Blocks for Equivariant Neural Networks in e3nn and PyTorch 2.0
      Python
      •
      Apache License 2.0
      •3•19•0•0•Updated Nov 16, 2025Nov 16, 2025

    • cortex-docs

      Public
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • llome

      Public
      Python
      •
      MIT License
      •3•12•0•0•Updated Aug 8, 2025Aug 8, 2025

    • lobster-docs

      Public
      Shell
      •
      Apache License 2.0
      •2•2•0•0•Updated Jun 13, 2025Jun 13, 2025

    • pflex

      Public
      Python
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

    • cortex

      Public
      A Modular Architecture for Deep Learning Systems
      Python
      •
      Apache License 2.0
      •8•56•1•2•Updated May 23, 2025May 23, 2025

    • BRIDGE

      Public
      BRIDGE: A Coarse-Grained Architecture to Embed Protein-Protein Interactions for Therapeutic Applications
      proteinviscosityantibody
      proteinviscosityantibodyaffinityprotein-protein-interfaces
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Apr 19, 2025Apr 19, 2025

    • bbo-bench

      Public
      Python
      •
      MIT License
      •1•3•0•0•Updated Mar 27, 2025Mar 27, 2025

    • nebula

      Public
      Python
      •
      Apache License 2.0
      •1•8•1•0•Updated Feb 13, 2025Feb 13, 2025

    • deepngs-navigator

      Public
      Python
      •
      Other
      •0•7•1•0•Updated Jan 29, 2025Jan 29, 2025

    • deepngs-navigator-panel-app

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • propen

      Public
      Jupyter Notebook
      •
      Other
      •1•13•0•0•Updated Dec 17, 2024Dec 17, 2024

    • CBGM

      Public
      Concept-based generative models
      Python
      •
      Apache License 2.0
      •3•12•2•0•Updated Dec 13, 2024Dec 13, 2024

    • funcmol

      Public
      Score-based 3D molecule generation with neural fields - NeurIPS 2024
      Python
      •
      Other
      •3•27•1•0•Updated Dec 3, 2024Dec 3, 2024

    • antibody-domainbed

      Public
      Python
      •
      Apache License 2.0
      •0•5•1•0•Updated Nov 2, 2024Nov 2, 2024

    • walk-jump

      Public
      Official repository for discrete Walk-Jump Sampling (dWJS)
      machine-learningproteinsprotein-sequences
      machine-learningproteinsprotein-sequencesantibodyprotein-design
      JavaScript
      •
      Apache License 2.0
      •9•61•5•1•Updated Jun 3, 2024Jun 3, 2024

    • D-GNN

      Public
      Antibody developability prediction using a novel Delaunay tessellation GNN adjacency
      Python
      •
      MIT License
      •1•9•0•0•Updated Jan 4, 2024Jan 4, 2024
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