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    • lobster

      Public
      Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
      Python
      Apache License 2.0
      341631911Updated Jul 1, 2026Jul 1, 2026
    • Python
      Apache License 2.0
      53512Updated Jun 17, 2026Jun 17, 2026
    • jamun

      Public
      Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles
      Python
      Apache License 2.0
      32002Updated May 16, 2026May 16, 2026
    • Benchmark for Biophysical Sequence Optimization Algorithms
      Python
      MIT License
      62311Updated Apr 15, 2026Apr 15, 2026
    • synapse

      Public
      Graph neural network for modeling multispecific antibody functional data
      Python
      Apache License 2.0
      11400Updated Feb 2, 2026Feb 2, 2026
    • ibex

      Public
      Antibody structure prediction
      Python
      Apache License 2.0
      33700Updated Dec 16, 2025Dec 16, 2025
    • igloo

      Public
      Tokenizing Loops of Antibodies
      Jupyter Notebook
      Apache License 2.0
      83500Updated Nov 23, 2025Nov 23, 2025
    • funcbind

      Public
      Unified all-atom structure-conditioned molecule generation
      Python
      Apache License 2.0
      32000Updated Nov 21, 2025Nov 21, 2025
    • e3tools

      Public
      Building Blocks for Equivariant Neural Networks in e3nn and PyTorch 2.0
      Python
      Apache License 2.0
      31900Updated Nov 16, 2025Nov 16, 2025
    • Shell
      Apache License 2.0
      1100Updated Aug 12, 2025Aug 12, 2025
    • llome

      Public
      Python
      MIT License
      31200Updated Aug 8, 2025Aug 8, 2025
    • Shell
      Apache License 2.0
      2200Updated Jun 13, 2025Jun 13, 2025
    • pflex

      Public
      Python
      0000Updated Jun 2, 2025Jun 2, 2025
    • cortex

      Public
      A Modular Architecture for Deep Learning Systems
      Python
      Apache License 2.0
      85612Updated May 23, 2025May 23, 2025
    • BRIDGE

      Public
      BRIDGE: A Coarse-Grained Architecture to Embed Protein-Protein Interactions for Therapeutic Applications
      Python
      Apache License 2.0
      1500Updated Apr 19, 2025Apr 19, 2025
    • bbo-bench

      Public
      Python
      MIT License
      1300Updated Mar 27, 2025Mar 27, 2025
    • nebula

      Public
      Python
      Apache License 2.0
      1810Updated Feb 13, 2025Feb 13, 2025
    • Python
      Other
      0710Updated Jan 29, 2025Jan 29, 2025
    • Python
      Other
      1000Updated Jan 29, 2025Jan 29, 2025
    • propen

      Public
      Jupyter Notebook
      Other
      11300Updated Dec 17, 2024Dec 17, 2024
    • CBGM

      Public
      Concept-based generative models
      Python
      Apache License 2.0
      31220Updated Dec 13, 2024Dec 13, 2024
    • funcmol

      Public
      Score-based 3D molecule generation with neural fields - NeurIPS 2024
      Python
      Other
      32710Updated Dec 3, 2024Dec 3, 2024
    • Python
      Apache License 2.0
      0510Updated Nov 2, 2024Nov 2, 2024
    • walk-jump

      Public
      Official repository for discrete Walk-Jump Sampling (dWJS)
      JavaScript
      Apache License 2.0
      96151Updated Jun 3, 2024Jun 3, 2024
    • D-GNN

      Public
      Antibody developability prediction using a novel Delaunay tessellation GNN adjacency
      Python
      MIT License
      1900Updated Jan 4, 2024Jan 4, 2024
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