Repositories list

• cipropaper

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 21, 2026Jun 21, 2026

• KlebNET-Metadata-Repository-Database

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2026Jun 19, 2026

• KpSC_surface_antigen_loci

  Public
  Kaptive databases for the Klebsiella pneumoniae Species Complex

  genomicsmicrobiologycapsule+ 4

  genomicsmicrobiologycapsuleserotypinglpsklebsiellakaptive

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• .github

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Jun 5, 2026Jun 5, 2026

• KoSC-surface-antigen-loci

  Public
  Kaptive databases for the Klebsiella oxytoca Species Complex (and Klebsiella indica)

  genomescapsuleserotyping+ 3

  genomescapsuleserotypinglpsklebsiellakaptive

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 5, 2026Jun 5, 2026

• Kaptive

  Public
  Python

  •

  GNU General Public License v3.0

  •2727 forks•6464 stars•11 issue•33 pull requests•Updated Jun 3, 2026Jun 3, 2026

• Kleborate

  Public
  Python

  •

  GNU General Public License v3.0

  •5252 forks•142142 stars•2525 issues•55 pull requests•Updated Jun 1, 2026Jun 1, 2026

• KlebNNS_transmission

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• Kleborate-viz

  Public
  Visualisation application for Klebsiella genotypes generated by Kleborate.

  visualisationgenotypingklebsiella

  visualisationgenotypingklebsiella

  R

  •22 forks•99 stars•11 issue•00 pull requests•Updated Mar 10, 2026Mar 10, 2026

• KlebSero_paper

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• KlebNNSsero

  Public
  Meta-analysis of K and O serotype distributions and coverage, from Klebsiella pneumoniae neonatal sepsis in African and South Asian countries. Accompanying the …

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 13, 2026Jan 13, 2026

• SPINZ

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• transmission_estimator

  Public
  R

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• KlebNetTrainingSep2025

  Public
  Slides from the "Klebsiella pneumoniae Genomic Epidemiology and Antimicrobial Resistance" delivered by KlebNET Genomic Surveillance Platform in September 2025

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• Klebsiella-genome-metadata

  Public
  Klebsiella genome metadata collection schema plus guidance, examples and collection template

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• KlebNNSapp

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2025Jun 27, 2025

• KlebRef

  Public
  A genomic resource of Klebsiella reference strains from ATCC, NCTC, BEI Resources MRSN Diversity Panel and KlebPhaCol.

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2025Mar 26, 2025

• protocols

  Public
  Protocols for Klebsiella genomic surveillance - including detection, isolation, DNA extraction, library preparation, sequence data processing and bioinformatics…

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 18, 2025Mar 18, 2025

• KleborateR

  Public
  R scripts for Kleborate and Kaptive analysis

  R

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 15, 2024Nov 15, 2024

• Kaptive-Web

  Public
  Kaptive web interface

  Python

  •

  Other

  •44 forks•1010 stars•33 issues•00 pull requests•Updated Nov 5, 2024Nov 5, 2024

• KleborateModular

  Public
  A modular rewrite of Kleborate

  Python

  •

  GNU General Public License v3.0

  •11 fork•66 stars•00 issues•00 pull requests•Updated Sep 3, 2024Sep 3, 2024

• KlebsGenomes3

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 30, 2023Mar 30, 2023

• kleborate_workshop_data

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 26, 2022Oct 26, 2022