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@evoldoers Evolutionary Software Foundation

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    13 repositories

    • tkfdp.net

      Public
      tkfdp.net — landing page for the TKF-DP paper (links to code + checkpoints + browsable supplement)
      HTML
      •0•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • tkfdp

      Public
      Cherry-trained indel-aware Potts coevolution: paper + reproduction
      Python
      •0•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • tkf-mixdom

      Public
      JAX TKF91/92/MixDom inference + training library
      Python
      •0•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • machineboss

      Public
      Bioinformatics Open Source Sequence machine
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •7•32•26•1•Updated Jun 18, 2026Jun 18, 2026

    • bio-datasets

      Public
      Fetch + preprocessing scripts for Pfam / BAliBASE / OxBench / TreeFam / Rfam
      Python
      •0•0•0•0•Updated May 16, 2026May 16, 2026

    • tc1-leaderboard

      Public
      Python
      •0•0•0•1•Updated Mar 31, 2026Mar 31, 2026

    • evoldeeds-old

      Public
      C++
      •1•1•3•1•Updated Aug 9, 2025Aug 9, 2025

    • historian

      Public
      Reconstruction of phylogenetic insertion-deletion histories
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•9•0•Updated Jun 14, 2025Jun 14, 2025

    • biomake

      Public
      GNU-Make-like utility for managing builds and complex workflows
      bioinformaticsprologswi-prolog
      bioinformaticsprologswi-prologworkflowsmakefilesgnu-make
      Prolog
      •
      BSD 3-Clause "New" or "Revised" License
      •9•111•25•2•Updated Nov 14, 2023Nov 14, 2023

    • carnaval

      Public
      Cellular Automata RNA for Virtual A-Life
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Feb 17, 2020Feb 17, 2020

    • wtfgo

      Public
      A demo of wtfgenes
      JavaScript
      •1•0•0•0•Updated Sep 15, 2018Sep 15, 2018

    • hdf5.node

      Public
      A node module for reading/writing the HDF5 file format.
      C++
      •
      MIT License
      •38•0•0•0•Updated May 25, 2017May 25, 2017

    • wtfgenes

      Public
      What's The Function of these genes?
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•22•2•0•Updated Mar 17, 2017Mar 17, 2017
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