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    • tkfdp.net

      Public
      tkfdp.net — landing page for the TKF-DP paper (links to code + checkpoints + browsable supplement)
      HTML
      0000Updated Jun 23, 2026Jun 23, 2026
    • tkfdp

      Public
      Cherry-trained indel-aware Potts coevolution: paper + reproduction
      Python
      0000Updated Jun 23, 2026Jun 23, 2026
    • JAX TKF91/92/MixDom inference + training library
      Python
      0000Updated Jun 23, 2026Jun 23, 2026
    • Bioinformatics Open Source Sequence machine
      C
      BSD 3-Clause "New" or "Revised" License
      732261Updated Jun 18, 2026Jun 18, 2026
    • Fetch + preprocessing scripts for Pfam / BAliBASE / OxBench / TreeFam / Rfam
      Python
      0000Updated May 16, 2026May 16, 2026
    • Python
      0001Updated Mar 31, 2026Mar 31, 2026
    • C++
      1131Updated Aug 9, 2025Aug 9, 2025
    • historian

      Public
      Reconstruction of phylogenetic insertion-deletion histories
      C++
      BSD 3-Clause "New" or "Revised" License
      2990Updated Jun 14, 2025Jun 14, 2025
    • biomake

      Public
      GNU-Make-like utility for managing builds and complex workflows
      Prolog
      BSD 3-Clause "New" or "Revised" License
      9111252Updated Nov 14, 2023Nov 14, 2023
    • carnaval

      Public
      Cellular Automata RNA for Virtual A-Life
      C++
      BSD 3-Clause "New" or "Revised" License
      0200Updated Feb 17, 2020Feb 17, 2020
    • wtfgo

      Public
      A demo of wtfgenes
      JavaScript
      1000Updated Sep 15, 2018Sep 15, 2018
    • hdf5.node

      Public
      A node module for reading/writing the HDF5 file format.
      C++
      MIT License
      38000Updated May 25, 2017May 25, 2017
    • wtfgenes

      Public
      What's The Function of these genes?
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      12220Updated Mar 17, 2017Mar 17, 2017
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