All

271 repositories

argo-helm-charts
Public
Go Template
•
MIT License
•0•0•0•15•Updated Jun 27, 2026Jun 27, 2026
cztack
Public
The CZI infrastructure stack.
HCL
•
MIT License
•24•70•0•1•Updated Jun 27, 2026Jun 27, 2026
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
•
MIT License
•6•7•8•35•Updated Jun 27, 2026Jun 27, 2026
miniwdl
Public
Workflow Description Language developer tools & local runner
wdl workflow-description-language
wdl workflow-description-language
Python
•
MIT License
•65•202•119•14•Updated Jun 27, 2026Jun 27, 2026
idetik
Public
TypeScript
•
MIT License
•0•13•50•11•Updated Jun 27, 2026Jun 27, 2026
github-actions
Public
A collection of re-usable GitHub Actions
HCL
•
MIT License
•4•7•2•9•Updated Jun 26, 2026Jun 26, 2026
edu-design-system
Public
Design system for Learning Commons Projects
react design-system style-dictionary
react design-system style-dictionary
TypeScript
•
MIT License
•4•33•1•3•Updated Jun 26, 2026Jun 26, 2026
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
•
MIT License
•15•91•252•16•Updated Jun 26, 2026Jun 26, 2026
aws-oidc
Public
AWS OIDC Federation
Go
•
MIT License
•6•20•0•3•Updated Jun 26, 2026Jun 26, 2026
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
•
MIT License
•13•30•251•22•Updated Jun 26, 2026Jun 26, 2026
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
•
MIT License
•6•20•61•9•Updated Jun 25, 2026Jun 25, 2026
cellxgene-census
Public
CZ CELLxGENE Discover Census
Jupyter Notebook
•
MIT License
•29•128•113•14•Updated Jun 25, 2026Jun 25, 2026
ops-schema
Public
Cathy's schema
Python
•
MIT License
•0•0•4•4•Updated Jun 25, 2026Jun 25, 2026
homebrew-tap
Public
Ruby
•2•3•2•0•Updated Jun 25, 2026Jun 25, 2026
single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
•
MIT License
•31•57•25•11•Updated Jun 25, 2026Jun 25, 2026
dataset-catalog
Public
Tooling and utilities to work with the dataset-catatlog
Python
•
MIT License
•0•2•2•12•Updated Jun 25, 2026Jun 25, 2026
cellxgene
Public
An interactive explorer for single-cell transcriptomics data
visualization dataviz scrna-seq
visualization dataviz scrna-seq scientific transcriptomics
JavaScript
•
MIT License
•155•778•133•2•Updated Jun 25, 2026Jun 25, 2026
py2rely
Public
Tools for Running Relion5 Sub-Tomogram Refinement Through CLI
relion cryo-et
relion cryo-et
Python
•
Other
•2•6•0•1•Updated Jun 25, 2026Jun 25, 2026
argus-artifacts
Public
MIT License
•0•1•0•0•Updated Jun 24, 2026Jun 24, 2026
saber
Public
Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2
computer-vision deep-learning volume-segmentation
computer-vision deep-learning volume-segmentation segmentation-models segment-anything
Jupyter Notebook
•
MIT License
•2•16•2•0•Updated Jun 23, 2026Jun 23, 2026
octopi
Public
Search for Protein 3D Coordinates in CryoET Tomograms
machine-learning deep-learning bayesian-optimization
machine-learning deep-learning bayesian-optimization 3d-segmentation cryo-et 3d-unet volumetric-segmentation
Python
•
Other
•6•9•1•3•Updated Jun 23, 2026Jun 23, 2026
fogg
Public
Manage Infrastructure as Code with less pain.
infrastructure terraform infrastructure-as-code
infrastructure terraform infrastructure-as-code
Go
•
MIT License
•20•306•2•2•Updated Jun 23, 2026Jun 23, 2026
camelot
Public
Go
•
MIT License
•0•1•0•1•Updated Jun 23, 2026Jun 23, 2026
cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
•
MIT License
•1•10•11•7•Updated Jun 22, 2026Jun 22, 2026
sci-components
Public
2021 Science Design System Component Library
react css theme
react css theme design-system
TypeScript
•
MIT License
•7•35•108•5•Updated Jun 21, 2026Jun 21, 2026
go-misc
Public
miscellaneous go code
Go
•
MIT License
•3•7•0•0•Updated Jun 16, 2026Jun 16, 2026
biohub-data-cli
Public
Python
•
MIT License
•0•0•0•2•Updated Jun 11, 2026Jun 11, 2026
blessclient
Public
Go client to negotiate SSH certificates
ssh certificate rsync
ssh certificate rsync scp ssh-agent czi
Go
•
MIT License
•13•63•8•2•Updated Jun 9, 2026Jun 9, 2026
alhazen
Public
AI agents + toolkits for scientific knowledge
scientific-knowledge-engineering landscape-analysis large-language-models
scientific-knowledge-engineering landscape-analysis large-language-models
Jupyter Notebook
•
MIT License
•3•42•1•4•Updated May 13, 2026May 13, 2026
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
•
Apache License 2.0
•1.2k•0•0•1•Updated May 13, 2026May 13, 2026

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Chan Zuckerberg Initiative

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All

271 repositories

argo-helm-charts

cztack

cryoet-data-portal-backend

miniwdl

idetik

github-actions

edu-design-system

single-cell-data-portal

aws-oidc

cryoet-data-portal

single-cell-explorer

cellxgene-census

ops-schema

homebrew-tap

single-cell-curation

dataset-catalog

cellxgene

py2rely

argus-artifacts

saber

octopi

fogg

camelot

cellxgene-ontology-guide

sci-components

go-misc

biohub-data-cli

blessclient

alhazen

open-data-registry

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Repositories list

271 repositories