Repositories list

• RedSeaHaploscleridaPhylosymbiosis

  Public
  Red Sea Haplosclerida Phylosymbiosis

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• Barcoding-inferred-Indo-Pacific-demosponge-biodiversity

  Public
  Barcoding-inferred biodiversity of shallow-water Indo-Pacific demosponges

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 25, 2026Feb 25, 2026

• MediterraneanTethyaMicrobiomes

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• HaploscleridMuseomics

  Public
  Repository storing files used for the Haplosclerid Museomics project

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 28, 2025Aug 28, 2025

• CalcBiomin

  Public
  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2025Aug 27, 2025

• Tethya-MuseOMICS

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2025Jun 22, 2025

• congeneric_synteny

  Public
  analysis of synteny across animals

  comparative-genomicssyntenyspeciation

  comparative-genomicssyntenyspeciation

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2025Mar 13, 2025

• HaploTC

  Public
  Target Capturing Genome-wide Loci in Marine Haplosclerids

  Creative Commons Zero v1.0 Universal

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 28, 2024Aug 28, 2024

• 2Tethya_genomes

  Public
  The genome of the contractile demosponge Tethya wilhelma

  genomegenome-annotationgenome-analysis+ 4

  genomegenome-annotationgenome-analysisgenome-assemblymetazoaporiferasponges

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 24, 2024Jun 24, 2024

• beauty_in_the_beast

  Public
  Raku

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 20, 2024May 20, 2024

• CalciteSea

  Public
  Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown unde…

  coralbiomineralizationscleractinia+ 1

  coralbiomineralizationscleractiniaoctocorallia

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 3, 2024Feb 3, 2024

• Aphrocallistes_vastus_genome

  Public
  Aphrocallistes vastus genome

  genomegenome-annotationgenome-analysis+ 3

  genomegenome-annotationgenome-analysismetazoabiomineralizationporifera

  Shell

  •

  Creative Commons Attribution Share Alike 4.0 International

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 12, 2023Oct 12, 2023

• SONNE_Hexactinellida

  Public
  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2023Jul 20, 2023

• triangulation

  Public
  Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

  bash-scriptproteomegenomes+ 6

  bash-scriptproteomegenomesphylogenyhomology-searchorthologygenomes-comparisonrevbayesfull-genome

  R

  •

  GNU General Public License v3.0

  •00 forks•55 stars•00 issues•00 pull requests•Updated May 4, 2023May 4, 2023

• KeratoseMuseOMICS

  Public
  Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny

  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 17, 2022Aug 17, 2022

• TransPi

  Public
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

  rna-seqannotationnextflow+ 6

  rna-seqannotationnextflowassemblytranscriptomicsdenovo-assemblyrna-seq-pipelinenextflow-pipelinenon-model-species

  Nextflow

  •

  Other

  •1919 forks•2727 stars•2626 issues•00 pull requests•Updated Jan 2, 2022Jan 2, 2022

• TransPi_paper

  Public
  TransPi - Supplementary files

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 13, 2021Dec 13, 2021

• PlasticsSponge

  Public
  Sponges as bioindicators for microparticulate pollutants

  R

  •11 fork•00 stars•00 issues•11 pull request•Updated Jun 7, 2020Jun 7, 2020

• PlasticsBacteria

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 11, 2020Feb 11, 2020

• Soft-Sponges-Tricky-Tree

  Public
  Data sets of "Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, a…

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 10, 2019Dec 10, 2019

• Molecular-biodiversity-of-Red-Sea-demosponges.

  Public
  Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with qu…

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 10, 2019Dec 10, 2019

• A-short-LSU-rRNA-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges

  Public
  Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC…

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 10, 2019Dec 10, 2019

• Spongillida_Minimalist_Barcodes

  Public
  Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schust…

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2019Jan 15, 2019

• mitoclocks2018

  Public
  Roff

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 30, 2018Jul 30, 2018

• Montipora_digitata_resources

  Public
  Companion repository for González-Pech et al.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2017Jun 22, 2017

• bio-phyta

  Public
  Ruby

  •

  GNU Lesser General Public License v3.0

  •11 fork•22 stars•11 issue•00 pull requests•Updated Dec 7, 2011Dec 7, 2011

• Kingdom-Assignment

  Public
  A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy

  Ruby

  •

  GNU Lesser General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 17, 2011Oct 17, 2011

• Annotate-GFF

  Public
  Add annotations to a GFF file

  Ruby

  •

  GNU Lesser General Public License v3.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Jun 7, 2011Jun 7, 2011

• Kingdom-Extraction

  Public
  Ruby

  •

  GNU Lesser General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 21, 2011Apr 21, 2011

• Kingdom-Splitter

  Public
  A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data.

  Ruby

  •

  GNU Lesser General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 21, 2011Apr 21, 2011