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    44 repositories

    • Assets

      Public
      Additional files (logos, splash screen, icons)
      Jupyter Notebook
      •
      Other
      •3•0•3•0•Updated Jul 6, 2026Jul 6, 2026

    • OpenMS

      Public
      The codebase of the OpenMS project
      windowsmacoslinux
      windowsmacoslinuxc-plus-plusalgorithmsproteomicsmetabolomicsmass-spectrometryopenmsms-data
      C++
      •
      Other
      •430•603•157•47•Updated Jul 6, 2026Jul 6, 2026

    • contrib

      Public
      Automated CMake build scripts for the OpenMS contrib libraries
      CMake
      •
      Other
      •22•0•5•2•Updated Jul 3, 2026Jul 3, 2026

    • pyopenms_viz

      Public
      Streamlining Mass Spectrometry Data Visualization with Pandas
      visualizationpandasmass-spectrometry
      visualizationpandasmass-spectrometry
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •20•23•8•8•Updated Jul 1, 2026Jul 1, 2026

    • OpenMS-website

      Public
      Hugo sources for the OpenMS website
      HTML
      •
      Other
      •22•0•6•5•Updated Jun 30, 2026Jun 30, 2026

    • FLASHApp

      Public
      Python
      •
      Other
      •1•0•0•8•Updated Jun 26, 2026Jun 26, 2026

    • ci-tools

      Public
      Internal CI/CD tools for OpenMS
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Jun 26, 2026Jun 26, 2026

    • mzpeak

      Public
      A C++ library that implements the mzPeak file format for efficiently storing data acquired by a mass spectrometer.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jun 26, 2026Jun 26, 2026

    • quantms-web

      Public
      Python
      •
      Other
      •1•0•1•9•Updated Jun 25, 2026Jun 25, 2026

    • OpenDIAKiosk

      Public
      Data-Independent Acquisition Information and Tools Hub
      Python
      •
      Other
      •35•0•1•0•Updated Jun 25, 2026Jun 25, 2026

    • streamlit-template

      Public
      Python
      •
      Other
      •35•17•36•26•Updated Jun 17, 2026Jun 17, 2026

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •4k•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • .github

      Public
      OpenMS organization public GitHub profile repository
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Apr 9, 2026Apr 9, 2026

    • Tutorials

      Public archive
      a dummy repo so we can have a checksum for GHA
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • OpenMS-docs

      Public archive
      OpenMS Documentation.
      hacktoberfest
      hacktoberfest
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •26•2•59•11•Updated Apr 9, 2026Apr 9, 2026

    • pyopenms-docs

      Public archive
      pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
      pythonopenmsms-data
      pythonopenmsms-datahacktoberfesthacktoberfest2022
      Python
      •
      Other
      •78•52•49•0•Updated Apr 9, 2026Apr 9, 2026

    • streamlit-deployment

      Public
      Streamlit deployment with Docker
      10•1•0•5•Updated Mar 27, 2026Mar 27, 2026

    • agentomics

      Public
      A repository of agentic created tools in proteomics using pyopenms
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • usage_plots

      Public
      Scripts for generating plots about the usage of OpenMS
      R
      •4•2•0•1•Updated Mar 18, 2026Mar 18, 2026

    • OpenMS-toolbox

      Public
      Python
      •
      Other
      •0•0•0•5•Updated Mar 14, 2026Mar 14, 2026

    • timsrust_cpp_bridge

      Public archive
      Rust
      •0•1•0•0•Updated Mar 12, 2026Mar 12, 2026

    • umetaflow

      Public
      Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.
      Python
      •11•11•3•1•Updated Feb 19, 2026Feb 19, 2026

    • contrib-sources

      Public
      Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.
      0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • autowrap

      Public
      Generates Python Extension modules from Cythons PXD files
      Python
      •
      Other
      •23•78•33•4•Updated Jan 14, 2026Jan 14, 2026

    • oDIAFlow

      Public
      An Open Nextflow pipeline for analyzing DIA-MS (Data-Independent Acquisition Mass Spectrometry) data.
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•16•0•Updated Dec 20, 2025Dec 20, 2025

    • openms-python

      Public
      Pythonic wrappers around PyOpenMS !!!!!!!!!!! under heavy development - only for internal use !!!!!!!!!!!
      Python
      •1•0•0•1•Updated Dec 16, 2025Dec 16, 2025

    • de.openms.knime

      Public
      Nodes etc. related to OpenMS
      Java
      •8•3•12•1•Updated Dec 11, 2025Dec 11, 2025

    • THIRDPARTY

      Public
      External binary dependencies (e.g. search engine binaries) packaged in installers
      13•2•1•1•Updated Dec 11, 2025Dec 11, 2025

    • mz-calculator

      Public archive
      Python
      •
      Other
      •0•3•0•5•Updated Oct 20, 2025Oct 20, 2025

    • dockerfiles

      Public archive
      This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
      Dockerfile
      •8•2•2•0•Updated Jun 2, 2025Jun 2, 2025
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