Fix leak and update actions (#24)

* Fix leak and update actions

Fix leak in grib_get_message when requesting multiple messages.
codes_handle_delete was not properly called during the loop.

Updated GHA

Fixes #23

Author: nawendt

.github/workflows/check-latest.yaml

@@ -1,12 +1,17 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+name: Build (Latest ecCodes)
+
 on:
   push:
     branches: [main]
   pull_request:
     branches: [main]
 
-name: Build (Latest ecCodes)
+concurrency:
+  group: ${{ github.workflow}}-${{ github.head_ref }}
+  cancel-in-progress: true
 
 jobs:
   R-CMD-check:
@@ -28,7 +33,7 @@ jobs:
       ECCODES_VERSION: 2.29.0
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/check-minimum.yaml

@@ -1,12 +1,17 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+name: Build (Minimum ecCodes)
+
 on:
   push:
     branches: [main]
   pull_request:
     branches: [main]
 
-name: Build (Minimum ecCodes)
+concurrency:
+  group: ${{ github.workflow}}-${{ github.head_ref }}
+  cancel-in-progress: true
 
 jobs:
   R-CMD-check:
@@ -28,7 +33,7 @@ jobs:
       ECCODES_VERSION: 2.19.0
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/check-standard.yaml

@@ -1,12 +1,17 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+name: Build (System ecCodes)
+
 on:
   push:
     branches: [main]
   pull_request:
     branches: [main]
 
-name: Build (System ecCodes)
+concurrency:
+  group: ${{ github.workflow}}-${{ github.head_ref }}
+  cancel-in-progress: true
 
 jobs:
   R-CMD-check:
@@ -28,7 +33,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/lint.yaml

@@ -1,20 +1,25 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+name: Lint
+
 on:
   push:
     branches: [main]
   pull_request:
     branches: [main]
 
-name: Lint
+concurrency:
+  group: ${{ github.workflow}}-${{ github.head_ref }}
+  cancel-in-progress: true
 
 jobs:
   lint:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:

.github/workflows/test-coverage.yaml

@@ -1,12 +1,17 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
+name: Codecov
+
 on:
   push:
     branches: [main]
   pull_request:
     branches: [main]
 
-name: Codecov
+concurrency:
+  group: ${{ github.workflow}}-${{ github.head_ref }}
+  cancel-in-progress: true
 
 jobs:
   test-coverage:
@@ -15,7 +20,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: gribr
 Type: Package
 Title: Read GRIB Files
-Version: 1.2.5
-Date: 2023-04-02
+Version: 1.2.6
+Date: 2023-07-10
 Author: Nathan Wendt <nathan.wendt@noaa.gov>
 Maintainer: Nathan Wendt <nathan.wendt@noaa.gov>
 BugReports: https://github.com/nawendt/gribr/issues

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.71 for gribr 1.2.5.
+# Generated by GNU Autoconf 2.71 for gribr 1.2.6.
 #
 # Report bugs to <nathan.wendt@noaa.gov>.
 #
@@ -610,8 +610,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='gribr'
 PACKAGE_TARNAME='gribr'
-PACKAGE_VERSION='1.2.5'
-PACKAGE_STRING='gribr 1.2.5'
+PACKAGE_VERSION='1.2.6'
+PACKAGE_STRING='gribr 1.2.6'
 PACKAGE_BUGREPORT='nathan.wendt@noaa.gov'
 PACKAGE_URL=''
 
@@ -1260,7 +1260,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures gribr 1.2.5 to adapt to many kinds of systems.
+\`configure' configures gribr 1.2.6 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1322,7 +1322,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of gribr 1.2.5:";;
+     short | recursive ) echo "Configuration of gribr 1.2.6:";;
    esac
   cat <<\_ACEOF
 
@@ -1406,7 +1406,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-gribr configure 1.2.5
+gribr configure 1.2.6
 generated by GNU Autoconf 2.71
 
 Copyright (C) 2021 Free Software Foundation, Inc.
@@ -1624,7 +1624,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by gribr $as_me 1.2.5, which was
+It was created by gribr $as_me 1.2.6, which was
 generated by GNU Autoconf 2.71.  Invocation command line was
 
   $ $0$ac_configure_args_raw
@@ -2295,9 +2295,9 @@ if test -z "${R_HOME}"; then
   exit 1
 fi
 
-#RBIN="${R_HOME}/bin/R"
-#CC=`"${RBIN}" CMD config CC`;
-#CPPFLAGS=`"${RBIN}" CMD config CPPFLAGS`
+RBIN="${R_HOME}/bin/R"
+CC=`"${RBIN}" CMD config CC`;
+CPPFLAGS=`"${RBIN}" CMD config CPPFLAGS`
 
 # Compiler checks
 
@@ -4235,7 +4235,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by gribr $as_me 1.2.5, which was
+This file was extended by gribr $as_me 1.2.6, which was
 generated by GNU Autoconf 2.71.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -4290,7 +4290,7 @@ ac_cs_config_escaped=`printf "%s\n" "$ac_cs_config" | sed "s/^ //; s/'/'\\\\\\\\
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config='$ac_cs_config_escaped'
 ac_cs_version="\\
-gribr config.status 1.2.5
+gribr config.status 1.2.6
 configured by $0, generated by GNU Autoconf 2.71,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -1,4 +1,4 @@
-AC_INIT([gribr],[1.2.5],[nathan.wendt@noaa.gov])
+AC_INIT([gribr],[1.2.6],[nathan.wendt@noaa.gov])
 
 AC_CONFIG_MACRO_DIR([tools/m4])
 

src/grib_get_message.c

@@ -65,8 +65,9 @@ SEXP gribr_grib_get_message(SEXP gribr_fileHandle, SEXP gribr_messages, SEXP gri
       }
 
       if ((p_gribr_messages[n] - 1) == i) {
-        SET_VECTOR_ELT(gribr_message, n++,gribr_message_from_handle(h));
+        SET_VECTOR_ELT(gribr_message, n++, gribr_message_from_handle(h));
       }
+      codes_handle_delete(h);
     }
   } else {
     if (p_gribr_messages[0] < 1 || (p_gribr_messages[0] - 1) >= count) {