Uniprot-MCP/pyproject.toml at master · josefdc/Uniprot-MCP · GitHub

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[project]
name = "uniprot-mcp"
version = "0.1.0"
description = "Model Context Protocol server that surfaces UniProtKB data as MCP resources, tools, and prompts."
readme = "README.md"
license = "MIT"
authors = [
    { name = "Jose Duarte", email = "josepipe0909@gmail.com" }
]
keywords = ["mcp", "uniprot", "bioinformatics", "llm", "agent"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
requires-python = ">=3.11"
dependencies = [
    "httpx>=0.28.1",
    "mcp[cli]>=1.19.0",
    "pydantic>=2.12.3",
    "starlette>=0.48.0",
    "tenacity>=9.1.2",
    "uvicorn>=0.38.0",
    "prometheus-client>=0.20.0",
]

[project.urls]
Homepage = "https://github.com/josefdc/Uniprot-MCP"
Repository = "https://github.com/josefdc/Uniprot-MCP"
Documentation = "https://github.com/josefdc/Uniprot-MCP#readme"
Issues = "https://github.com/josefdc/Uniprot-MCP/issues"

[project.scripts]
uniprot-mcp = "uniprot_mcp.server:main"
uniprot-mcp-http = "uniprot_mcp.__main__:run_http"

[dependency-groups]
dev = [
    "pytest>=8.4.2",
    "pytest-asyncio>=1.2.0",
    "pytest-cov>=4.1.0",
    "anyio[trio]>=4.4.0",
    "vcrpy>=7.0.0",
]

[build-system]
requires = ["setuptools>=68.0"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
package-dir = { "" = "src" }

[tool.setuptools.packages.find]
where = ["src"]

[tool.ruff]
target-version = "py311"
line-length = 100
src = ["src", "tests"]

[tool.ruff.lint]
select = [
    "E",
    "F",
    "I",
    "B",
    "UP",
]
ignore = ["B008"]  # Allow function call defaults for MCP decorators

[tool.ruff.format]
quote-style = "double"

[tool.mypy]
python_version = "3.11"
strict = true
mypy_path = ["src"]
plugins = []
disallow_subclassing_any = false

[[tool.mypy.overrides]]
module = ["mcp.*", "httpx.*", "httpx", "pydantic", "tenacity", "vcrpy", "starlette.*", "uvicorn"]
ignore_missing_imports = true

[tool.pytest.ini_options]
addopts = "-q"
testpaths = ["tests"]