MS2ID/DESCRIPTION at master · jmbadia/MS2ID · GitHub

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Package: MS2ID
Type: Package
Title: High-throughput MS/MS annotation using an unique in house database
Version: 0.3.0
Authors@R: c(person(given = "Josep M.",
           family = "Badia",
           role = c("aut", "cre"),
           email = "josepmaria.badia@urv.cat",
           comment = c(ORCID = "0000-0002-5704-1124")),
    person(given = "Roger", family = "Gine Bertomeu",
      email = "roger.gine@urv.cat", role = "ctb",
      comment = c(ORCID = "0000-0003-0288-9619"))
    )
Maintainer: Josep M. Badia <josepmaria.badia@urv.cat>
Description: MS2ID provides functionality to high-throughput MS/MS spectrum
    annotation.  It is used a in house database spectra created using
    different sources.
License: MIT + file LICENSE
URL: https://jmbadia.github.io/MS2ID/index.html
BugReports: https://github.com/jmbadia/MS2ID/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Depends:
    R (>= 3.5.0)
Imports:
    methods,
    Rdpack,
    bigmemory,
    DBI,
    RSQLite,
    mzR,
    BiocParallel,
    pbapply,
    stats,
    Spectra,
    dplyr,
    utils,
    philentropy,
    magrittr,
    openxlsx,
    shiny,
    plotly,
    DT,
    ggplot2,
    shinyFiles,
    shinyjs,
    glue,
    bslib,
    tidyr,
    clue
Collate:
    'AllGenerics.R'
    'Annot.R'
    'Annot-methods.R'
    'MS2ID.R'
    'NLscore.R'
    'SQL-utility-tools.R'
    'adduct-utility-functions.R'
    'annotate.R'
    'app.R'
    'basicMS2IDstrct.R'
    'bigMemory-utility-tools.R'
    'checkTypes.R'
    'consensus.R'
    'createMS2ID.R'
    'customValues.R'
    'data.R'
    'export2df.R'
    'export2xlsx.R'
    'loadSpectra.R'
    'mzIdx.R'
    'processAnnotation.R'
    'queryMzIndex.R'
    'server.R'
    'setMS2IDbackend.R'
    'spectra-utility-functions.R'
    'utils-pipe.R'
    'zzz.R'
Suggests:
    BiocStyle,
    knitr,
    CompoundDb,
    rmarkdown,
    enviPat,
    splashR
VignetteBuilder: knitr
RdMacros: Rdpack