paper.bib

@article{born2021trends,
  title = {Trends in Deep Learning for Property-driven Drug Design},
  author = {Born, Jannis and Manica, Matteo},
  journal = {Current Medicinal Chemistry},
  volume = {28},
  number = {38},
  pages = {7862--7886},
  year = {2021},
  publisher = {Bentham Science Publishers},
  doi = {10.2174/0929867328666210729115728},
  url = {https://doi.org/10.2174/0929867328666210729115728}
}

@article{born2021on,
  title = {On the Role of Artificial Intelligence in Medical Imaging of COVID-19},
  author = {Born, Jannis and Beymer, David and Rajan, Deepta and Coy, Adam and Mukherjee, Vandana V. and Manica, Matteo and Prasanna, Prasanth and Ballah, Deddeh and Guindy, Michal and Shaham, Dorith and Shah, Pallav L. and Karteris, Emmanouil and Robertus, Jan L. and Gabrani, Maria and Rosen-Zvi, Michal},
  journal = {Patterns},
  volume = {2},
  number = {6},
  pages = {100269},
  year = {2021},
  doi = {10.1016/j.patter.2021.100269},
  url = {https://doi.org/10.1016/j.patter.2021.100269}
}

@inproceedings{mirza2025chempile,
  title = {ChemPile: A 250 GB Diverse and Curated Dataset for Chemical Foundation Models},
  author = {Mirza, Adrian and Alampara, Nawaf and Rios-Garcia, Martino and Abdelalim, Mohamed and Butler, Jack and Connolly, Bethany and Dogan, Tunca and Nezhurina, Marianna and Sen, Bunyamin and Tirunagari, Santosh and Worrall, Mark and Young, Adamo and Schwaller, Philippe and Pieler, Michael and Jablonka, Kevin Maik},
  booktitle = {Advances in Neural Information Processing Systems, Datasets and Benchmarks Track},
  year = {2025},
  url = {https://proceedings.neurips.cc/paper_files/paper/2025/file/505dc6a661fe8dcffaac4c3621eea69d-Paper-Datasets_and_Benchmarks_Track.pdf}
}

@inproceedings{wellawatte2024chemlitqa,
  title = {ChemLit-QA: A Human Evaluated Dataset for Chemistry RAG Tasks},
  author = {Wellawatte, Geemi P. and Guo, Huixuan and Lederbauer, Magdalena and Borisova, Anna and Hart, Matthew and Bucka, Marta and Schwaller, Philippe},
  booktitle = {Machine Learning and the Physical Sciences Workshop, NeurIPS},
  year = {2024},
  url = {https://ml4physicalsciences.github.io/2024/files/NeurIPS_ML4PS_2024_44.pdf}
}

@inproceedings{zhang2024peace,
  title = {{PEaCE}: A Chemistry-Oriented Dataset for Optical Character Recognition on Scientific Documents},
  author = {Zhang, Nan and Heaton, Connor and Okonsky, Sean Timothy and Mitra, Prasenjit and Toraman, Hilal Ezgi},
  booktitle = {Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation},
  pages = {12679--12689},
  year = {2024},
  url = {https://aclanthology.org/2024.lrec-main.1110/}
}

@article{truong2026virtual,
  title = {Can Virtual Agents Care? Designing an Empathetic and Personalized {LLM}-Driven Conversational Agent},
  author = {Truong, Le Minh Toan and Mach, Dieu Bang and Le, Tan Duy and Tuyen, Nguyen Tan Viet},
  journal = {arXiv},
  year = {2026},
  doi = {10.48550/arXiv.2604.20948},
  url = {https://arxiv.org/abs/2604.20948}
}

@article{bartneck2011detecting,
  title = {Detecting h-index manipulation through self-citation analysis},
  author = {Bartneck, Christoph and Kokkelmans, Servaas},
  journal = {Scientometrics},
  volume = {87},
  pages = {85--98},
  year = {2011},
  doi = {10.1007/s11192-010-0306-5},
  url = {https://doi.org/10.1007/s11192-010-0306-5}
}

@article{szomszor2020how,
  title = {How much is too much? The difference between research influence and self-citation excess},
  author = {Szomszor, Martin and Pendlebury, David A. and Adams, Jonathan},
  journal = {Scientometrics},
  volume = {123},
  pages = {1119--1147},
  year = {2020},
  doi = {10.1007/s11192-020-03417-5},
  url = {https://doi.org/10.1007/s11192-020-03417-5}
}

@software{arxiv_python,
  title = {arxiv.py: Python wrapper for the arXiv API},
  author = {{arxiv.py contributors}},
  year = {2026},
  url = {https://github.com/lukasschwab/arxiv.py},
  urldate = {2026-05-29}
}

@software{pymed,
  title = {PyMed: PubMed Access through Python},
  author = {Wobben, Gijs},
  year = {2018},
  url = {https://pypi.org/project/pymed/},
  urldate = {2026-06-12}
}

@software{pymed_paperscraper,
  title = {pymed-paperscraper: A maintained PyMed fork for paperscraper},
  author = {{pymed-paperscraper contributors}},
  year = {2026},
  url = {https://pypi.org/project/pymed-paperscraper/},
  urldate = {2026-05-30}
}

@misc{pymed_paperscraper_releases,
  title = {pymed-paperscraper Release Notes},
  author = {{pymed-paperscraper contributors}},
  year = {2026},
  url = {https://github.com/jannisborn/pymed/releases},
  urldate = {2026-05-30}
}

@software{scholarly,
  title = {scholarly: Simple access to Google Scholar authors and citation using Python},
  author = {{scholarly contributors}},
  year = {2026},
  url = {https://github.com/scholarly-python-package/scholarly},
  urldate = {2026-05-29}
}

@misc{crossref_api,
  title = {Crossref REST API},
  author = {{Crossref}},
  year = {2026},
  url = {https://www.crossref.org/documentation/retrieve-metadata/rest-api/},
  urldate = {2026-05-29}
}

@article{openalex,
  title = {OpenAlex: A fully-open index of scholarly works, authors, venues, institutions, and concepts},
  author = {Priem, Jason and Piwowar, Heather and Orr, Richard},
  year = {2022},
  journal = {arXiv},
  doi = {10.48550/arXiv.2205.01833},
  url = {https://arxiv.org/abs/2205.01833}
}

@misc{semantic_scholar_api,
  title = {Semantic Scholar API},
  author = {{Allen Institute for AI}},
  year = {2026},
  url = {https://www.semanticscholar.org/product/api},
  urldate = {2026-05-29}
}

@misc{nlm_copyright,
  title = {Copyright Information and Downloading National Library of Medicine Data},
  author = {{National Library of Medicine}},
  year = {2018},
  url = {https://www.nlm.nih.gov/databases/download.html},
  urldate = {2026-05-29}
}

@misc{arxiv_license,
  title = {arXiv License Information},
  author = {{arXiv}},
  year = {2026},
  url = {https://info.arxiv.org/help/license/index.html},
  urldate = {2026-05-29}
}

@misc{biorxiv_api,
  title = {bioRxiv API},
  author = {{bioRxiv and medRxiv}},
  year = {2026},
  url = {https://api.biorxiv.org/},
  urldate = {2026-05-29}
}

@misc{medrxiv_tdm,
  title = {medRxiv Text and Data Mining},
  author = {{medRxiv}},
  year = {2026},
  url = {https://www.medrxiv.org/tdm},
  urldate = {2026-05-29}
}

@misc{chemrxiv_terms,
  title = {ChemRxiv Terms of Use},
  author = {{ChemRxiv}},
  year = {2026},
  url = {https://chemrxiv.org/engage/assets/public/chemrxiv/term/terms-of-use.htm},
  urldate = {2026-05-29}
}

@misc{paperscraper_github,
  title = {paperscraper GitHub Repository},
  author = {{paperscraper contributors}},
  year = {2026},
  url = {https://github.com/jannisborn/paperscraper},
  urldate = {2026-05-30}
}

@misc{pepy_paperscraper,
  title = {PePy Download Statistics for paperscraper},
  author = {{PePy}},
  year = {2026},
  url = {https://pepy.tech/projects/paperscraper},
  urldate = {2026-05-30}
}

@misc{pypi_paperscraper,
  title = {paperscraper Release History on PyPI},
  author = {{Python Package Index}},
  year = {2026},
  url = {https://pypi.org/project/paperscraper/#history},
  urldate = {2026-05-31}
}