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plattner_2023

Source code to reproduce figures from Plattner et al. iScience. 2023

Obtain the data

All preprocessed data required to run these analyses are available from Zenodo.

cd ../../../data
wget https://zenodo.org/record/7015015/files/clinical_data_organoids.tsv?download=1
wget -O exomeseq.zip https://zenodo.org/record/7015015/files/exomeseq.zip?download=1
wget -O imaging.zip https://zenodo.org/record/7015015/files/imaging.zip?download=1
wget -O phosphoproteomics.zip  https://zenodo.org/record/7015015/files/phosphoproteomics.zip?download=1
wget -O proteomics.zip https://zenodo.org/record/7015015/files/proteomics.zip?download=1
wget -O rnaseq.zip https://zenodo.org/record/7015015/files/rnaseq.zip?download=1
wget -O scrnaseq.zip https://zenodo.org/record/1015015/files/scrnaseq.zip?download=1
unzip *.zip

Contact

If you have questions regarding the analyses, please use the issue tracker.