Skip to content

Commit 4945695

Browse files
committed
epi >> {mlspatial, WarnEpi}
1 parent 663fd17 commit 4945695

1 file changed

Lines changed: 4 additions & 0 deletions

File tree

qmd/epidemiology.qmd

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -19,6 +19,10 @@
1919
- [{]{style="color: #990000"}[infectiousR](https://lightbluetitan.github.io/infectiousr/){style="color: #990000"}[}]{style="color: #990000"} - Interface to access real-time data on infectious diseases through the disease.sh API, a RESTful API offering global health statistics.
2020
- Enables users to explore up-to-date information on disease outbreaks, vaccination progress, and surveillance metrics across countries, continents, and U.S. states.
2121
- Includes a set of API-related functions to retrieve real-time statistics on COVID-19, influenza-like illnesses from the Centers for Disease Control and Prevention (CDC), and vaccination coverage worldwide.
22+
- [{]{style="color: #990000"}[mlspatial](https://cran.r-project.org/web/packages/mlspatial/index.html){style="color: #990000"}[}]{style="color: #990000"} - Provides tools for the integration, visualisation, and modelling of spatial epidemiological data
23+
- Enables users to import and pre-process shapefile and associated demographic or disease incidence data, generate richly annotated thematic maps, and apply predictive models, including Random Forest, 'XGBoost', and Support Vector Regression, to identify spatial patterns and risk factors.
24+
- [{]{style="color: #990000"}[WarnEpi](https://cran.r-project.org/web/packages/WarnEpi/index.html){style="color: #990000"}[}]{style="color: #990000"} - A Comprehensive Tool for Early Warning in Infectious Disease
25+
- Provides statistical tools for analyzing time-series monitoring data through three core methods: a) EWMA (Exponentially Weighted Moving Average) b) Modified-CUSUM (Modified Cumulative Sum) c) Adjusted-Serfling model
2226
- Resources
2327
- [The Epidemiologist R Handbook](https://epirhandbook.com/en/)
2428
- [R4EPIs](https://r4epis.netlify.app/) - A project to develop standardized data cleaning, analysis and reporting tools to cover common types of outbreaks and population-based surveys that would be conducted in an MSF emergency response setting (automated outbreak templates)

0 commit comments

Comments
 (0)