From 8f76d494c576d05280f82fa25a9e4b7c167f92fb Mon Sep 17 00:00:00 2001
From: challagandla <challagandla.anil@gmail.com>
Date: Fri, 12 Jun 2026 10:26:04 +0400
Subject: [PATCH] Pin raw_fastq_qc env tool versions for reproducible solves

envs/raw_fastq_qc.yaml previously left fastqc/fastq-screen/bowtie2/multiqc
unpinned. Pin to the same versions used across the other pipelines
(fastqc 0.12.1, fastq-screen 0.15.3, bowtie2 2.5.4, multiqc 1.25) so the
contamination-QC env resolves deterministically.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
---
 envs/raw_fastq_qc.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/envs/raw_fastq_qc.yaml b/envs/raw_fastq_qc.yaml
index d47d7ff..9c8e13c 100644
--- a/envs/raw_fastq_qc.yaml
+++ b/envs/raw_fastq_qc.yaml
@@ -5,7 +5,7 @@ channels:
   - defaults
 dependencies:
   - python=3.11
-  - fastqc
-  - fastq-screen
-  - bowtie2
-  - multiqc
+  - fastqc=0.12.1
+  - fastq-screen=0.15.3
+  - bowtie2=2.5.4
+  - multiqc=1.25