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docs(examples): finish residual 79 + repair runnability gate
Completes the docstring Examples campaign to 1027/1031 (99.6%): - agent-native introspection (registry/help/_agent_docs), core exceptions + result base classes, 11 causal result classes — all real runnable examples (exceptions use try/except so they never raise; result classes mirror their parent function's verified DGP). - bayes (17), neural_causal (13): illustrative examples with every heavy-dep line '# doctest: +SKIP' (PyMC/torch absent in [dev]/CI); pure-numpy policy_weight_* made genuinely runnable. Repairs the runnability gate (was failing in any torch-less env): sp.tarnet / sp.cfrnet / sp.dragonnet (function wrappers) and sp.DeepIV had un-skipped .fit() calls that ImportError without torch — now '# doctest: +SKIP' on the torch lines (data-construction stays live). Adds the missed LLMAnnotatorResult example (direct construction). Gates: examples_coverage missing 79 -> 4 (budget lowered to 4); check_example_execution 1014 runnable / 0 failing (budget 0). The residual 4 (anthropic_client, echo_client, openai_client, particle_filter) carry Examples but are registered-yet-not-top-level- exposed (sp.<name> raises) — an API-exposure decision deferred past review, documented in the workflow + campaign log. Schema bundle regenerated (3 result-class descriptions now human-readable). No new citations. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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.examples_campaign/CAMPAIGN.md

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| 1 | causal 头部:DML 配套 + RD 家族 + matching + DiD/SDID | 28 | ✅ 2026-06-12 |
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| 2 | CATE diag + forest + qte + DiD reporting + policy | 32 | ✅ 2026-06-12 |
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| 3 | inference/mht + diagnostics + RD 余量 + synth exports | 40 | ✅ 2026-06-12 |
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| 4 | panel(GLMM/feglm/fepois)+ survey + mediation/gformula | ~30 | pending |
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| 5 | output + postestimation + smart/agent | ~35 | pending |
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| 6 | decomposition + spatial | ~40 | pending |
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| 7 | mendelian + epi + dag + timeseries | ~45 | pending |
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| 8 | 其余长尾(conformal/neural/interference/…) | ~60 | pending |
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| 9 | class-style deferred tier 复盘(决定哪些值得加) || pending |
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| 10 | CI ratchet 收紧至最终值 + docs 同步 || pending |
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| 4-N | 余下全部(panel/output/decomp/spatial/mendelian/epi/dag/ts/…) | 大批 | ✅ 并行会话 Workflow 扫完 |
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| 残余 | agent/core/bayes/neural/result-class/validation 79 个 | 79 | ✅ 2026-06-14 本会话 6 agent |
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| 收尾 | runnability 门修复 + ratchet 收紧至 4/0 || ✅ 2026-06-14 |
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每批交付定义:示例运行验证 → `worklist.md` 勾选 → ratchet 预算下调 →
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单独 commit(`docs(examples): batch N — <范围>`)。
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## 最终状态(2026-06-14)
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- **覆盖率 1027/1031 = 99.6%**(presence gate `missing=4`)。
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- **runnability gate `ran_ok=1014 failed=0`**(每个非 `+SKIP` 示例实跑通过)。
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- 两道 CI 闸门预算:`examples_coverage --max-missing 4` +
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`check_example_execution --max-failures 0`
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- **残余 4 个**:`anthropic_client` / `echo_client` / `openai_client`
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(causal_llm)+ `particle_filter`(assimilation)。这 4 个 docstring
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**已带 Examples**,但它们 registered-在-registry 却**未在顶层暴露**
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(`sp.echo_client` 抛 AttributeError),scanner 的 `getattr(sp, name)`
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够不到其 docstring。这是 registry/export 不一致(应暴露还是应
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de-register),属公开 API 决策——审稿期间不擅自改,留待用户拍板;
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解决后预算可进一步降到 0。
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## CI ratchet
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`parity-guards.yml` 的 registry-drift job 挂
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`scripts/examples_coverage.py --check --max-missing <budget>`。预算只
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降不升;新注册函数若不带 Examples 会撞预算失败。当前预算:**561**
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`parity-guards.yml` 的 registry-drift job 挂两道:
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`scripts/examples_coverage.py --check --max-missing 4`(presence)+
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`scripts/check_example_execution.py --max-failures 0`(runnability)。
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预算只降不升;新注册函数若不带可运行 Examples 会撞门失败。当前预算:
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**presence 4 / runnability 0**
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## Log
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已知(非本批):`diagnostics/tests.py``diagnose` 有一个早已存在
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的失败 doctest(缺 import),按 additions-only 原则未动,留待后续
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专门修复。
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- **2026-06-14 残余收尾**(本会话,并行会话已扫完中段):用 6 个并行
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agent(按模块分桶、零写竞争)补齐最后 79 个——agent 自省 API
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(registry/help/_agent_docs,真可运行)、core 异常+结果类(try/except
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保证不抛)、bayes 17 个(policy_weights 真可运行,估计器/结果类
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`# doctest: +SKIP` 因 PyMC 不在 env/CI)、neural_causal 13 个(torch
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不在 → 全 +SKIP)、11 个 causal 结果类(从父函数已有示例复制 DGP,真
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可运行)、validation/llm/assimilation/gformula 杂项。**修复运行门 4 个
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真失败**:`sp.tarnet`/`sp.cfrnet`/`sp.dragonnet`(函数版)+ `sp.DeepIV`
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`.fit()` 调用先前未加 `+SKIP`,在无 torch 的 `[dev]` CI 里会
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ImportError——已逐行 +SKIP 修复(数据构造行仍真跑)。补 `LLMAnnotatorResult`
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示例(直接构造结果对象,真可运行)。收 14 行 bayes 超 79 字符。
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presence 79 → 4,runnability failed → 0;ratchet 收紧 4/0。

.github/workflows/parity-guards.yml

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@@ -82,21 +82,27 @@ jobs:
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# Ratchet, not target: the budget is the current number of
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# registered symbols whose docstring lacks an ``Examples``
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# section. The 2026-06 examples campaign drove this from 661
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# (2026-06-12 baseline, 370/1031 covered) down to 79 (952/1031,
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# 92.3%). The residual 79 are heavy-optional / infra categories
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# (bayes, neural_causal, causal_llm, agent, core, validation).
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# The budget must NEVER be raised: a new public function that
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# ships without a docstring Examples section fails this gate
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# (CLAUDE.md §4 requires Parameters/Returns/Examples/References).
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# (2026-06-12 baseline, 370/1031 covered) down to 4 (1027/1031,
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# 99.6%). The residual 4 — anthropic_client, echo_client,
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# openai_client, particle_filter — DO carry Examples in their
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# docstrings, but are registered in the registry yet not exposed
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# at the top level (``sp.echo_client`` raises AttributeError), so
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# the scanner's ``getattr(sp, name)`` cannot reach the docstring.
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# That registry-vs-export inconsistency is an API-exposure
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# decision (expose vs de-register) deferred past JOSS review; the
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# budget can only drop further once it is resolved. The budget
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# must NEVER be raised: a new public function that ships without a
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# docstring Examples section fails this gate (CLAUDE.md §4 requires
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# Parameters/Returns/Examples/References).
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run: |
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python scripts/examples_coverage.py --check --max-missing 79
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python scripts/examples_coverage.py --check --max-missing 4
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- name: check_example_execution (docstring Examples runnability)
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# Presence is necessary but not sufficient: an ``Examples`` block
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# that references an undefined ``df`` or a bare ``did(...)`` call
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# is documentation theatre. This gate extracts every example's
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# ``>>>`` source (dropping ``# doctest: +SKIP`` lines for
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# heavy-dep / external-data blocks) and executes it. The whole
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# campaign was verified to 939 runnable / 0 failing; the ratchet
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# campaign was verified to 1014 runnable / 0 failing; the ratchet
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# holds that line. A new example that does not run fails here.
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run: |
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python scripts/check_example_execution.py --quiet --max-failures 0

schemas/functions.json

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}
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},
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{
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"description": "GenMatchResult(att: 'float', att_se: 'float', ci: 'tuple', pvalue: 'float', weights: 'np.ndarray', balance: 'pd.DataFrame', matches: 'np.ndarray', n_treated: 'int', n_obs: 'int', detail: 'Dict[str, Any]' = <factory>)",
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"description": "Output of :func:`sp.genmatch` (Diamond-Sekhon genetic matching).",
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"name": "GenMatchResult",
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"parameters": {
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"properties": {
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}
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},
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{
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"description": "CEVAEResult(ate: 'float', ite: 'np.ndarray', loss_history: 'list[float]', backend: 'str')",
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"description": "Container for CEVAE estimates (ATE, unit-level ITE, loss history).",
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"name": "CEVAEResult",
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"parameters": {
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"properties": {
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}
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},
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{
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"description": "ICEResult(strategy: 'list', value: 'float', se: 'float', ci: 'tuple[float, float]', method: 'str' = 'parametric-g-formula-ICE', per_timepoint_means: 'list[float]' = None)",
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"description": "Result of the iterative conditional expectation (ICE) g-formula.",
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"name": "ICEResult",
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"parameters": {
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"properties": {

src/statspai/_agent_docs.py

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------
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KeyError
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If ``name`` is not a registered function.
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Examples
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--------
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>>> import statspai as sp
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>>> md = sp.render_agent_block('did')
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>>> isinstance(md, str)
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True
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>>> 'For Agents' in md
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True
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>>> 'For Agents' in sp.render_agent_block('did', header=False)
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False
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"""
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from .registry import agent_card as _card
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-------
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str
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Markdown; empty if nothing to render.
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Examples
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--------
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>>> import statspai as sp
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>>> md = sp.render_agent_blocks(names=['did'])
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>>> isinstance(md, str)
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True
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>>> 'For Agents' in md
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True
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>>> '### `sp.did`' in md
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True
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"""
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from .registry import agent_cards as _cards
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src/statspai/bayes/_base.py

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Full posterior trace for downstream plotting / diagnostics.
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model_info : dict
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Misc. fit metadata (draws, tune, chains, priors, ...).
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110+
Examples
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--------
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>>> import statspai as sp
113+
>>> # Returned by every scalar-estimand Bayesian estimator, e.g.
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>>> # bayes_rd / bayes_iv (requires the `bayes` extra:
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>>> # pip install 'statspai[bayes]').
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>>> res = sp.bayes_rd(df, y='y', running='x', cutoff=0.0) # doctest: +SKIP
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>>> isinstance(res, sp.BayesianCausalResult) # doctest: +SKIP
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>>> res.posterior_mean, res.hdi_lower, res.hdi_upper # doctest: +SKIP
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>>> res.prob_positive # posterior P(estimand > 0) # doctest: +SKIP
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>>> res.rhat, res.ess # convergence diagnostics # doctest: +SKIP
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>>> res.tidy() # doctest: +SKIP
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"""
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method: str
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The ``cohort_labels`` field preserves the user's original cohort
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values in the order the model sampled them; iteration order is
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deterministic and matches the posterior variable axis.
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Examples
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--------
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>>> import statspai as sp
403+
>>> # Returned by bayes_did (requires the `bayes` extra:
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>>> # pip install 'statspai[bayes]'). Pass cohort=... to populate
405+
>>> # the per-cohort posteriors.
406+
>>> res = sp.bayes_did(df, y='y', treat='treat', post='post',
407+
... cohort='first_treat') # doctest: +SKIP
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>>> res.tidy() # pooled ATT row # doctest: +SKIP
409+
>>> res.tidy(terms='per_cohort') # one row per cohort # doctest: +SKIP
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>>> res.cohort_summaries # doctest: +SKIP
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"""
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388413
cohort_summaries: Dict[str, Dict[str, float]] = field(default_factory=dict)
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populated by :func:`bayes_iv` when called with
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``per_instrument=True``. When the dict is empty (default),
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behaviour matches v0.9.15 exactly.
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Examples
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--------
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>>> import statspai as sp
502+
>>> # Returned by bayes_iv (requires the `bayes` extra:
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>>> # pip install 'statspai[bayes]'). Pass per_instrument=True with
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>>> # multiple instruments to populate the per-Z posteriors.
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>>> res = sp.bayes_iv(df, y='y', treat='d',
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... instrument=['z1', 'z2'],
507+
... per_instrument=True) # doctest: +SKIP
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>>> res.tidy() # pooled LATE row # doctest: +SKIP
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>>> res.tidy(terms='per_instrument') # doctest: +SKIP
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>>> res.instrument_summaries # doctest: +SKIP
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"""
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475513
instrument_summaries: Dict[str, Dict[str, float]] = field(default_factory=dict)
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Carries the average LATE (inherited) *plus* a table of CATE-slope
551589
posteriors — one row per effect modifier.
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Examples
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--------
593+
>>> import statspai as sp
594+
>>> # Returned by bayes_hte_iv (requires the `bayes` extra:
595+
>>> # pip install 'statspai[bayes]').
596+
>>> res = sp.bayes_hte_iv(df, y='y', treat='d', instrument='z',
597+
... effect_modifiers=['age']) # doctest: +SKIP
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>>> res.posterior_mean # doctest: +SKIP
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>>> res.cate_slopes # doctest: +SKIP
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>>> res.predict_cate({'age': 40}) # doctest: +SKIP
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"""
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554603
cate_slopes: pd.DataFrame = field(default_factory=pd.DataFrame)
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full posterior over the MTE curve ``tau(u)`` on a user-specified
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grid, plus integrated summaries over the treated / untreated /
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average populations (ATT, ATU, ATE).
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Examples
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--------
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>>> import statspai as sp
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>>> # Returned by bayes_mte (requires the `bayes` extra:
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>>> # pip install 'statspai[bayes]').
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>>> res = sp.bayes_mte(df, y='y', treat='d',
668+
... instrument='z') # doctest: +SKIP
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>>> res.ate, res.att, res.atu # doctest: +SKIP
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>>> res.mte_curve # doctest: +SKIP
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>>> res.tidy(terms=['ate', 'att', 'atu']) # doctest: +SKIP
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>>> # Policy-relevant effect with a ready-made weight builder:
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>>> res.policy_effect(sp.policy_weight_ate()) # doctest: +SKIP
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"""
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mte_curve: pd.DataFrame = field(default_factory=pd.DataFrame)

src/statspai/bayes/did.py

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-------
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BayesianCausalResult
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Posterior summary of the ATT.
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Examples
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--------
239+
>>> import statspai as sp
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>>> import pandas as pd
241+
>>> # Bayesian DiD with NUTS (requires the `bayes` extra:
242+
>>> # pip install 'statspai[bayes]'). draws/tune reduced here for
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>>> # illustration; defaults are draws=2000, tune=1000, chains=4.
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>>> res = sp.bayes_did(df, y='y', treat='treat', post='post',
245+
... unit='id', time='t',
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... draws=500, tune=500, chains=2) # doctest: +SKIP
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>>> print(res.summary()) # posterior ATT + R-hat / ESS # doctest: +SKIP
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>>> res.tidy() # doctest: +SKIP
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"""
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pm, _ = _require_pymc()
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src/statspai/bayes/dml.py

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Learning for Causal Inference." arXiv:2508.12688.
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(The underlying orthogonal-moments DML construction is due to
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Chernozhukov et al. 2018, Econometrics Journal.) [@ditraglia2025bayesian]
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Examples
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--------
130+
>>> import statspai as sp
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>>> import pandas as pd
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>>> # Conjugate mode (default) cross-fits sp.dml then applies a
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>>> # Normal-Normal update; 'full' mode needs the `bayes` extra.
134+
>>> res = sp.bayes_dml(df, y='y', treatment='d',
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... covariates=['x1', 'x2'],
136+
... prior_mean=0.0, prior_sd=1.0) # doctest: +SKIP
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>>> print(res.summary()) # doctest: +SKIP
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>>> res.posterior_mean, res.ci # doctest: +SKIP
127139
"""
128140
if mode not in ("conjugate", "full"):
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raise ValueError(f"mode must be 'conjugate' or 'full'; got {mode!r}.")

src/statspai/bayes/fuzzy_rd.py

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-------
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BayesianCausalResult
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Posterior over the LATE.
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Examples
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--------
117+
>>> import statspai as sp
118+
>>> import pandas as pd
119+
>>> # Fuzzy RD LATE = ITT_Y / ITT_D at the cutoff via NUTS
120+
>>> # (requires the `bayes` extra: pip install 'statspai[bayes]').
121+
>>> res = sp.bayes_fuzzy_rd(df, y='y', treat='d', running='x',
122+
... cutoff=0.0, poly=1, draws=500,
123+
... tune=500, chains=2) # doctest: +SKIP
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>>> print(res.summary()) # doctest: +SKIP
125+
>>> # First-stage strength diagnostics live in model_info:
126+
>>> res.model_info['first_stage_mean'] # doctest: +SKIP
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"""
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pm, _ = _require_pymc()
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src/statspai/bayes/hte_iv.py

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BayesianHTEIVResult
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`BayesianCausalResult` with a `cate_slopes` DataFrame and
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`predict_cate(values)` method.
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Examples
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--------
146+
>>> import statspai as sp
147+
>>> import pandas as pd
148+
>>> # Bayesian IV with LATE that varies linearly in 'age'
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>>> # (requires the `bayes` extra: pip install 'statspai[bayes]').
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>>> res = sp.bayes_hte_iv(df, y='y', treat='d', instrument='z',
151+
... effect_modifiers=['age'],
152+
... draws=500, tune=500, chains=2) # doctest: +SKIP
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>>> res.cate_slopes # one row per effect modifier # doctest: +SKIP
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>>> # Posterior CATE at a specific modifier value:
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>>> res.predict_cate({'age': 40}) # doctest: +SKIP
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"""
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pm, _ = _require_pymc()
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prep = _prepare_hte_iv_frame(

src/statspai/bayes/iv.py

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-------
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BayesianCausalResult
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Posterior summary on the LATE coefficient.
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Examples
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--------
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>>> import statspai as sp
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>>> import pandas as pd
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>>> # Bayesian IV jointly modelling first stage + structural eq.
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>>> # (requires the `bayes` extra: pip install 'statspai[bayes]').
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>>> res = sp.bayes_iv(df, y='y', treat='d', instrument='z',
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... covariates=['x1'],
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... draws=500, tune=500, chains=2) # doctest: +SKIP
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>>> print(res.summary()) # doctest: +SKIP
158+
>>> # Multiple instruments with one LATE row per instrument:
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>>> res2 = sp.bayes_iv(df, y='y', treat='d',
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... instrument=['z1', 'z2'],
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... per_instrument=True) # doctest: +SKIP
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>>> res2.tidy(terms='per_instrument') # doctest: +SKIP
147163
"""
148164
pm, _ = _require_pymc()
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