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Fix: Udichi issues

Fix: Udichi issues #67

Triggered via pull request March 25, 2026 05:02
Status Failure
Total duration 40m 55s
Artifacts 4

check-bioc.yml

on: pull_request
Matrix: build-check
Matrix: docker-build-and-push
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6 errors and 17 warnings
ubuntu-latest (4.5)
Process completed with exit code 1.
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (4.3)
Process completed with exit code 1.
macOS-latest (4.3)
R CMD check found ERRORs
windows-latest (4.3)
Process completed with exit code 1.
windows-latest (4.3)
R CMD check found ERRORs
ubuntu-latest (4.5)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (devel)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (4.3)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (4.3)
Unused variable ‘j’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused dummy argument ‘ifmt’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.3)
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.3)
Unused variable ‘i’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.3)
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (4.3)
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (4.3)
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
macOS-latest (4.3)
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.3)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (4.3)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
windows-latest (4.3)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (4.3)
this package has a non-empty 'configure.win' file,

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-3.22-r-4.5-results Expired
16.8 MB
sha256:15add7734c46aefa18d936b1e6965f32dc3f8a21d77a8ac0eb803e439f4fa708
Linux-biocversion-3.23-r-devel-results Expired
16.8 MB
sha256:b0727fb10e4dd4f70328a04fc9ace598a3d659b28a308ab7f8636a253a84c445
Windows-biocversion-3.18-r-4.3-results Expired
16.8 MB
sha256:f647452a1fad617e5f8ae46e028187544278f1f3638dd912533481176189e940
macOS-biocversion-3.18-r-4.3-results Expired
16.4 MB
sha256:e775f9d0842965e2e09062a049aee580a20c2e10acc8b0859cdd005006f2fb67