Commit 9fd2bc2
fix: standardize all SKILL.md metadata across awesome-med-research-skills and scientific-skills
Ensure every skill has author: AIPOCH (uppercase), license: MIT, and source link with blank line before title.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>1 parent efafac2 commit 9fd2bc2
1,334 files changed
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File tree
- awesome-med-research-skills
- Academic Writing
- author-response-builder
- claim-strength-calibrator
- conference-abstract-writer
- consistency-checker-across-manuscript
- cover-letter-drafter
- discussion-composer
- figure-legend-writer
- grant-specific-aims-writer
- graphical-abstract-generator
- introduction-logic-builder
- introduction-section-writer
- latex-manuscript-format-converter
- lay-summary-for-cross-disciplinary-teams
- limitation-and-risk-writer
- medical-english-precision-editor
- methods-section-writer
- poster-storyline-builder
- reference-integrity-checker
- reporting-guideline-compliance-checker
- results-section-structurer
- results-section-writer
- revision-strategy-planner
- slide-deck-for-lab-meeting
- table-narrative-writer
- target-journal-matcher
- title-and-abstract-optimizer
- Data Analysis
- LightGBM-analysis
- references
- scripts
- tests/data
- XGBoost-analysis
- references
- scripts
- tests/data
- batch-effect-correction
- references
- scripts
- tests
- data
- testthat
- cerna-analysis
- references
- database
- scripts
- tests
- data
- testthat
- cibersort-immune-infiltration-analysis
- references
- scripts
- tests
- data
- consensus-clustering-analysis
- references
- scripts
- tests
- data
- testthat
- decision-curve-analysis
- references
- scripts
- tests
- data
- decision-tree-analysis
- references
- scripts
- tests/data
- deg-screening-analysis
- references
- scripts
- tests
- data
- differential-expression-analysis
- references
- scripts
- tests/data
- elastic-net-feature-selection
- references
- scripts
- tests
- data
- testthat
- estimate-immune-score-analysis
- references
- scripts
- tests
- data
- external-model-validation
- references
- scripts
- tests
- data
- gene-protein-expression-matrix-normalization
- references
- scripts
- tests
- data
- gokegg
- assets
- references
- scripts
- test/data
- gsea
- assets
- references
- scripts
- tests/data
- gsva-analysis-and-visualization
- references
- scripts
- tests
- data
- hierarchical-clustering-plot
- references
- scripts
- tests
- data
- testthat
- immune-pathway-analysis
- references
- scripts
- tests
- data
- km-survival-curve
- references
- scripts
- tests/data
- knn-imputation
- references
- scripts
- tests/data
- lasso-logistics-analysis
- references
- scripts
- tests
- data
- testthat
- lncrna-regulatory-network-construction-analysis
- references
- database
- scripts
- tests
- data
- model-calibration-curve
- references
- scripts
- tests
- data
- nomogram-construction
- references
- scripts
- tests
- data
- expected_output
- data
- plot
- table
- testthat
- pca-dimensionality-reduction
- references
- scripts
- tests/data
- ppi-network-analysis
- references
- string_cache
- scripts
- tests
- data
- rf-model-importance-analysis
- references
- scripts
- tests
- data
- roc-diagnostic-performance
- references
- scripts
- tests
- data
- expected_output
- data
- table
- sample-correlation-analysis
- references
- scripts
- tests/data
- sample-group-sankey-plot
- references
- scripts
- tests
- data
- ssgsea-immune-infiltration-analysis
- references
- scripts
- tests
- data
- svm-model-importance-analysis
- references
- scripts
- tests
- data
- tf-target-gene-regulatory-network
- database
- references
- scripts
- tests
- audit_v2_case_aliases
- data
- table
- audit_v2_case_canonical
- data
- table
- audit_v2_case_custom
- data
- table
- audit_v2_case_file
- data
- table
- audit_v2_case_mouse
- data
- table
- data
- verify_legacy_aliases
- data
- table
- time-dependent-roc
- references
- scripts
- tests/data
- umap-tsne-analysis
- references
- scripts
- tests
- data
- testthat
- univariate-multivariable-cox-regression
- references
- scripts
- tests
- data
- expected_output
- data
- plot
- table
- wgcna-analysis
- references
- scripts
- tests
- data
- Evidence Insight
- basic-discovery-translational-opportunity-finder
- bioinformatics-translational-opportunity-finder
- biomarker-landscape-scanner
- biomedical-search-strategy-builder
- clinical-question-clarifier
- contradictory-findings-resolver
- disease-mechanism-evidence-map
- drug-target-evidence-landscape
- evidence-level-ranker
- figure-first-paper-reader
- high-value-paper-screener
- litbase
- medical-research-gap-finder
- medical-research-literature-reader-pro
- medical-topic-saturation-and-whitespace-checker
- method-gap-detector
- methods-reverse-engineer
- multi-database-literature-collector
- novelty-vs-feasibility-assessor
- paper-to-claim-verifier
- population-gap-detector
- preprint-surveillance-finder
- result-reliability-checker
- study-design-identifier
- topic-evidence-mapper
- unmet-clinical-need-extractor
- Other
- bianque
- mendel
- Protocol Design
- active-comparator-single-soc-faers-safety-comparison
- aim-and-hypothesis-designer
- animal-and-cell-validation-planner
- bidirectional-multi-phenotype-mr-research-planner
- references
- bulk-omics-integrative-planner
- case-control-study-planner
- clinical-cohort-protocol-designer
- comorbidity-common-immune-biomarker-research-planner
- references
- confounder-and-bias-control-planner
- conventional-non-oncology-hub-gene-research-planner
- references
- conventional-oncology-hub-gene-research-planner
- references
- drug-repurposing-study-planner
- endpoint-definition-designer
- faers-pharmacovigilance-disproportionality-research-planner
- references
- feasibility-aware-study-planner
- generic-phenotype-scoring-research-planner
- references
- inclusion-exclusion-criteria-builder
- mechanism-to-validation-planner
- medical-research-algorithm-matcher
- medical-research-gap-to-study-planner
- mendelian-randomization-protocol-designer
- mr-scrna-research-planner
- references
- multi-omics-clinical-integration-planner
- nhanes-clinical-retrospective-biomarker-research-planner
- references
- non-tumor-mechanism-guided-diagnostic-ml-research-planner
- references
- pcd-immune-oncology-research-planner
- references
- primary-plan-recommender
- prognostic-biomarker-protocol-designer
- qtl-colocalization-study-planner
- real-world-evidence-study-designer
- sample-size-and-power-planning-assistant
- single-cell-research-planner
- references
- single-compound-network-toxicology-disease-link-reference-grounded
- single-drug-adverse-effect-hub-first-network-pharmacology
- single-drug-adverse-effect-pathway-anchored-network-pharmacology
- single-drug-faers-safety-profile-research-planner
- references
- single-gene-oncology-reference-grounded-research-planner
- references
- study-objective-refiner
- translational-study-blueprint
- treatment-response-predictor-planner
- tumor-immune-infiltration-diagnostic-ml-research-planner
- references
- two-sample-mr-exposure-screening-reference-grounded
- validation-strategy-designer
- scientific-skills
- Academic Writing
- abstract-summarizer
- abstract-trimmer
- academic-abstract-refiner
- academic-highlight-generator
- adverse-event-narrative
- anatomy-quiz-master
- anki-card-creator
- authorship-credit-gen
- automated-soap-note-generator
- biomed-outline-generator
- biotech-pitch-deck-narrative
- blind-review-sanitizer
- citation-formatter
- conference-abstract-adaptor
- conference-poster-pitch
- cover-letter-drafter
- cover-letter-generator
- dei-statement-drafter
- digital-twin-discharge-drafter
- discharge-summary-writer
- discussion-section-architect
- ectd-xml-compiler
- ehr-semantic-compressor
- faq-generator
- figure-legend-gen
- figure-reference-checker
- grant-budget-justification
- grant-mock-reviewer
- graph-interpretation
- hipaa-compliance-auditor
- iacuc-protocol-drafter
- irb-application-assistant
- journal-club-presenter
- journal-cover-prompter
- labarchive-integration
- latex-posters
- lay-press-release-writer
- lay-summary-gen
- linkedin-optimizer
- market-access-value
- medical-cv-resume-builder
- medical-device-mdr-auditor
- medical-email-polisher
- medical-scribe-dictation
- medical-translation
- medication-adherence-message-gen
- meeting-minutes
- meta-analysis-methods-generator
- meta-baseline-generator
- meta-manuscript-generator
- meta-results-forest-plot-analyzer
- meta-results-funnel-plot-generator
- meta-results-risk-of-bias
- meta-results-sensitivity-analysis
- method-writing
- microbiome-diversity-reporter
- moa-explainer
- molecular-review-workflow
- networking-email-drafter
- nih-biosketch-builder
- paper-2-web
- patent-assistant
- patient-recruitment-ad-gen
- peer-review-response-drafter
- peer-review
- personal-statement
- poster-layout-planner
- presentation-hook
- prior-auth-letter-drafter
- q-and-a-prep-partner
- radiology-image-quiz
- rebuttal-letter-strategist
- recommendation-letter-assistant
- reference-style-sync
- referral-letter-generator
- residency-interview-prep
- response-letter
- response-tone-polisher
- sample-size-power-calculator
- semantic-consistency-auditor
- study-limitations-drafter
- tone-adjuster
- usmle-case-generator
- visual-content-desc
- Data Analysis
- 3d-molecule-ray-tracer
- Case-control-study-quality-assessment-nos
- TorchDrug-English
- adme-property-predictor
- anndata
- baseline-extraction-for-clinical-trials
- biopython-advanced
- biopython-alignment
- biopython-phylo
- biopython-sequence-io
- biopython-structure
- biopython
- bioservices
- circos-plot-generator
- clinical-data-cleaner
- cnv-caller-plotter
- cobrapy
- code-refactor-for-reproducibility
- cohort-study-quality-assessment-nos
- crispr-screen-analyzer
- deeptools
- diagnostic-study-quality-assessment-quadas-2
- dnanexus-integration
- etetoolkit
- experimental-data-analysis
- facs-gating-viz-style
- fastqc-report-interpreter
- flowio
- forest-plot-styler
- gene-structure-mapper
- geniml
- geopandas
- graphical-abstract-wizard
- gtars
- heatmap-beautifier
- histolab
- lab-budget-forecaster
- lamindb
- lipinski-rule-filter
- matchms
- matplotlib
- mechanism-flowchart
- meta-abstract-screener
- meta-baujat-plot
- meta-criteria-generator
- meta-feasibility-analyzer
- meta-forest-binary-plot
- meta-forest-continuous-plot
- meta-forest-model-plot
- meta-funnel-plot
- meta-picos-generator
- meta-radial-plot
- meta-rob2-plot
- meta-screening-fulltext
- meta-sensitivity-plot
- meta-title-generator
- metabolomics-workbench-database
- metagenomic-krona-chart
- motif-logo-generator
- neoantigen-predictor
- neurokit2
- neuropixels-analysis
- outcome-extraction-for-clinical-trials
- outlier-detection-handler
- pathml
- pathology-roi-selector
- phylogenetic-tree-styler
- preclinical-pkpd-analyst
- probast-quality-assessment-for-prediction-model-studies
- protocol-deviation-classifier
- pseudotime-trajectory-viz
- pydeseq2
- pydicom
- pyopenms-skill
- pysam
- quadas-c-assessment-for-diagnostic-accuracy-studies
- quality-assessment
- quapas-quality-assessment-for-prognosis-studies
- rct-bias-assessment-rob2
- rowan
- sanger-chromatogram-qa
- scanpy
- scikit-bio
- scikit-survival
- scrna-cell-type-annotator
- scvi-tools
- seaborn
- sequence-alignment
- singlecell-portal
- smiles-de-salter
- spatial-transcriptomics-mapper
- statistical-analysis-advisor
- statistical-analysis
- study-design-scale-selector
- survival-analysis-km
- survival-curve-risk-table
- table-1-generator
- toxicity-structure-alert
- upset-plot-converter
- variant-pathogenicity-predictor
- volcano-plot-labeler
- volcano-plot-script
- western-blot-quantifier
- Evidence Insight
- acronym-unpacker
- alphafold-db
- arboreto
- arxiv-database
- bio-ontology-mapper
- biogrid-orcs
- biopython-entrez
- biorxiv-database
- blockbuster-therapy-predictor
- brenda-database
- cellosaurus-api
- cellxgene-census
- chea-api
- chembl-database
- citation-chasing-mapping
- citation-management
- citation-network
- clinical-study-info-extractor
- clinicaltrials-db
- clinicaltrials-gov-parser
- clinpgx-database
- clinvar-database
- comparison-table-gen
- competitor-trial-monitor
- concept-explainer
- cosmic-database
- cross-disciplinary-bridge-finder
- crossref-database
- ctd-api
- diffdock-molecular-docking
- drug-interaction-checker
- drugbank-database
- emerging-topic-scout
- ena-database
- encode-api
- encori-api
- ensembl-database
- fda-database
- fda-guideline-search
- funding-trend-forecaster
- gene-database
- gene-info
- geo-search-api
- gget
- grant-funding-scout
- grant-gantt-chart-gen
- gwas-database
- hgnc-api
- hmdb-database
- ib-summarizer
- jaspar-api
- journal-impact-factor-trend
- journal-latest-issue
- journal-matchmaker
- journal-skills
- kegg-api
- kegg-database
- key-takeaways
- keyword-velocity-tracker
- literature-close-read
- literature-experiment-extract
- literature-extensive-read
- literature-filtering
- medchem
- methodology-extractor
- open-access-scout
- open-source-license-check
- open-targets-db
- openalex-db
- patent-claim-mapper
- patent-landscape
- pathway-introduction-expert
- pdb-database
- pdf-extract-experimental-materials
- phenotype-introduction
- pubchem-database-skill
- pubmed-search-specialist
- pubmed-topic-recommend
- pytdc
- rare-disease-hpo-mapper
- reactome-skill
- reagent-substitute-scout
- reference-finder
- reference-search
- research-article-weekly
- research-hotspot-analysis
- research-paper-downloader
- retraction-watcher
- scholar-evaluation
- scientific-podcast-summary
- scite-database
- sds-msds-risk-scanner
- semantic-scholar-database
- smart-journal-monitor
- string-database
- systematic-review-screener
- target-novelty-scorer
- translational-gap-analyzer
- uniprot-database
- unstructured-medical-text-miner
- variant-annotation
- venue-templates
- zinc-database
- Other
- Lab-Prep-Calculations
- PPTX-Skill
- academic-cv-generator
- academic-norm-review
- academic-poster-generator
- adaptyv
- api-design-principles
- article-format-adjustment
- benchling-integration
- bib-formatter
- bibliography
- biodbnet-api
- bmi-bsa-calculator
- brainstorming
- buffer-calculator
- chart-style-unifier
- chemical-storage-sorter
- chemical-structure-converter
- clinic-sample-size
- clinical-reports
- co2-tank-monitor
- cold-chain-risk-calculator
- conference-tweet-generator
- conflict-of-interest-checker
- content-proofreading
- datamol
- date-calculator
- dicom-anonymizer
- docx-feedback-tracker
- dpi-upscaler-checker
- ebm-calculator
- equipment-maintenance-log
- experiment-detail-comparator
- expert-interview-generator
- expert-interview-topics
- file-management
- file-search
- file-security-toolkit
- fulltext-fetcher
- hippocrates
- html-to-pdf
- id-photo-tool
- image-ocr
- image-processing
- imagegenskill
- iso-13485-certification
- journal-recommender
- knowledge-base-search
- kv-design
- lab-inventory-predictor
- lab-result-interpretation
- learning-tutoring
- literature-management
- literature-statistics
- literatureimages-interpretation
- market-research-report-generator
- markitdown
- medical-case-interpreter
- medical-case-report-generator
- medical-unit-converter
- medication-reconciliation
- meeting-assistant
- meeting-minutes-generator
- meta-search-builder
- microscopy-scale-bar-adder
- mindmap-helper
- mindmap
- multi-panel-figure-assembler
- multi-source-news-writer
- note-summarizer
- paper-tweet-generator
- patient-consent-simplifier
- pdf-extract
- pdf-ppt
- pdf-processor
- pdf-to-ppt-pack
- plan-generator
- plotly
- postdoc-fellowship-matcher
- poster-designer
- pptx-posters
- ppt
- reagent-expiry-alert
- reproducibility-check
- resubmission-deadline-tracker
- result-figure-consistencycheck
- schedule-management
- sci-paper-reviewer
- science-popularization-article
- scientific-schematics
- search-pubmed
- shift-handover-summarizer
- short-video-script-generator
- slide-deck-images
- soft-article-writer
- spreadsheet-ops
- symptom-checker-triage
- task-reminder
- text-format-organizer
- text-to-technical-roadmap
- time-zone-planner
- treatment-plans
- uspto-database
- vector-text-fixer
- virtual-patient-roleplay
- waste-disposal-guide
- word-read-write
- Protocol Design
- INPLASY-registration-helper
- basic-research-design
- clinic-research-design
- dual-disease-transcriptomic-ml-planner
- esm
- faers-multi-drug-soc-planner
- hypogenic
- hypothesis-generation
- meta-protocol-writer
- network-tox-docking-research-planner
- non-tumor-ml-research-planner
- prospero-registration-helper
- protocol-standardization
- research-grants
- research-proposal-generator
- two-sample-mr-research-planner
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