changed break to continue when annotated peptide is encountered in SPRAT

Author: charles-bernard

rrnpp_detector/search_small_orfs.py

@@ -105,13 +105,7 @@ def get_orfs(genomic_accession, strand, region_start, region_end, region_seq,
         # if detected small orf already is annotated, don't print it in fasta
         # Store nonetheless the RBS values in protein dict
         if genomic_key in coord_to_anno_pep:
-            protein_dict[coord_to_anno_pep[genomic_key]]['RBS_bin'] = None
-            protein_dict[coord_to_anno_pep[genomic_key]]['RBS_spacer'] = None
-            protein_dict[coord_to_anno_pep[genomic_key]]['RBS_motif'] = None
-            # outfile.write('>' + coord_to_anno_pep[genomic_key] + ' ' + genomic_accession + '_[' + str(real_start) + '-' + str(real_end) + '](' + strand + 
-            #               ')_Anchor=' + anchor_protein + '_RBS_bin=' + str(rbs_bin) + ';RBS_motif=' + rbs_motif + ';RBS_spacer=' + str(rbs_spacer) + '\n')
-            # outfile.write(orf_seq + '\n')
-            # break
+            continue
 
         # if orf has a relevant RBS, fill protein_dict, cognate_dict and pair_dict
         if rbs_bin in bins_allowed: