Skip to content

Commit 9226fa5

Browse files
authored
Update README.md
1 parent 669c1c5 commit 9226fa5

1 file changed

Lines changed: 3 additions & 1 deletion

File tree

README.md

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -11,7 +11,8 @@
1111
**_fusemblr_** is a pipeline wrapper designed for the assembly of complex genomes using nanopore reads and paired-end illumina
1212

1313
**_fusemblr_** was designed for the <i>Fusarium oxysporum</i> assembly project (hence the name) <br/>
14-
The pipeline uses Nanopore (the longer and higher coverage the better); paired-end illumina reads and PacBio is optional <br/>
14+
The pipeline only requires Nanopore reads (the longer and higher coverage the better) and an estimation of genome size <br/>
15+
Paired-end illumina reads and PacBio is optional <br/>
1516

1617
<i>Notably: Providing both illumina PacBio Hifi had very little impact on the resulting assemblies using our _Fusarium oxysporum_ datasets as we used recent ONT basecalled data, had high coverage and a good subset of long reads.</i>
1718

@@ -74,6 +75,7 @@ The pipeline uses Nanopore (the longer and higher coverage the better); paired-e
7475

7576

7677
Following assembly it is recommended that you run [PAQman](https://github.com/SAMtoBAM/PAQman) on your resulting assembly to comprehensively check the quality <br/>
78+
It is recommended to feed your resulting assembly to PAQman alongside the 1.filtlong/*.fz.gz set of reads <br/>
7779
This can also help you compare any assemblies you have to check for the best.
7880

7981

0 commit comments

Comments
 (0)