apptainer_build.yaml

name: fusemblr apptainer build and push

on:
  push:
    branches:
      - main  # or any other branch you want to trigger the workflow

jobs:
  apptainer-build-and-push:
    runs-on: ubuntu-latest
    permissions:
        contents: read
        packages: write
    container:
        image: quay.io/singularity/singularity:v3.8.1
        options: --privileged
    steps:
    - name: Checkout Repository
      uses: actions/checkout@v2


    # Step to set up Apptainer and build the .sif image
    - name: Build Apptainer Image
      run: |
        singularity build fusemblr.sif apptainer/fusemblr.def
        
    - name: Login and Deploy Container
      run: |
           echo ${{ secrets.APPTAINER_API_TOKEN }} | singularity remote login -u ${{ secrets.GHCR_USERNAME }} --password-stdin oras://ghcr.io
           singularity push fusemblr.sif oras://ghcr.io/samtobam/fusemblr:${tag}