- add exclusion of samples in clustering (549b4ce)
- add functionality to append date to sample name (af867c7)
- add logging (74c7607)
- add run-wide presets (6033ba1)
- add smarter selection of samples to add (14648a5)
- added collfinder script and env (c061a5d)
- error logging and handling for collfinder (1f0fc55)
- first version (3b46d23)
- include previous clustering (1673cb5)
- make previous clustering optional (5f276f9)
- save merge warnings to separate file (4ac47d9)
- small change to run_pipeline.sh for initial clustering run (09c7429)
- update distle (c0e686d)
- add enable and disable nounset (f4ae6c1)
- bug with WGS controle samples (d7e79c1)
- check for previous collection before iget (b0faae6)
- check if previous run var is empty (291edbf)
- check if user data state is invalid (5355dd6)
- directory path instead of expanding to a list of all files. (ac965da)
- fixed url to git repo (517b2dc)
- get correct portion of input collection name (6348278)
- get input collection name from irods metadata (5f82e6a)
- iget previous collection (a5d822b)
- logic for exclude files (2b73dd2)
- make exclude list optional (9e4ee00)
- print for debugging (71dbfc6)
- remove exclusion file for first test run (32f1b16)
- remove previous clustering code for initial run (6dd835b)
- remove renaming code within pipeline (57fc6e7)
- set extra_metadata_not (b0a3292)
- style fix (5bb6018)
- truncate the timestamp (39df881)
- truncate timestamp for getting latest run (e08c60e)
- update juno lib version in yaml (531b909)
- update setuptools (9a03e48)
- use runsheet input collection as input for collfinder (36b6e28)
- working exclusion (d1ee067)
- wrap rules according to clustering type (1d92996)
- add network_analysis container (f1497e8)
- include conda installs (ad7560a)
- update juno-lib (2e9b46c)
- update snakemake (3ea7a46)
1.0.1 (2023-07-12)
- remove anaconda and defaults and add no defaults channel (0b4fccb)