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Merge pull request #731 from Planteome/Release-2026
Make release
2 parents d7ecb63 + f5e2a95 commit fb1d146

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Lines changed: 106 additions & 15 deletions

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‎po.obo‎

Lines changed: 25 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
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format-version: 1.2
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data-version: releases/2025-10-31
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data-version: releases/2026-01-09
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saved-by: cooperl
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subsetdef: Angiosperm "Term for angiosperms"
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subsetdef: Arabidopsis "Term used for Arabidopsis"
@@ -10905,7 +10905,7 @@ alt_id: PO:0020083
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alt_id: PO:0020087
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alt_id: PO:0020107
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def: "A multi-tissue plant structure (PO:0025496) that develops from a gynoecium (PO:0009062), or a single carpel (PO:0009030), and at maturity may have as parts one or more seeds (PO:0009010)." [NYBG:Brandon_Sinn, NYBG:Dario_Cavaliere, POC:curators, POC:Laurel_Cooper]
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comment: A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘aggregate’, ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms.
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comment: A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms.
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subset: Angiosperm
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subset: Arabidopsis
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subset: Maize
@@ -10936,14 +10936,13 @@ id: PO:0009002
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name: plant cell
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namespace: plant_anatomy
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def: "A cell which is a plant structure (PO:0009011)." [CL:0000000, POC:curators]
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comment: Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell GO:0005623: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope". GO:0009505. Definition of plant-type cell wall (GO:0009505): A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances, synonym; exact: cellulose and pectin-containing cell wall.
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comment: Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell CL:0000000: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one)". Definition of plant-type cell wall (GO:0009505): "A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances." Exact synonym: cellulose and pectin-containing cell wall.
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subset: CL
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subset: reference
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subset: TraitNet
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synonym: "c&#233lula vegetal (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
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synonym: "cell (broad)" BROAD []
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synonym: "植物細胞 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
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xref: GO:0005623
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xref: PO_GIT:56
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is_a: PO:0009011 ! plant structure
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disjoint_from: PO:0009007 ! portion of plant tissue
@@ -17816,7 +17815,7 @@ creation_date: 2010-12-30T03:47:08Z
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id: PO:0025248
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name: pseudostem
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namespace: plant_anatomy
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def: "A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths." [POC:Ramona_Walls]
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def: "A collective organ part structure that forms a cylindrical false stem composed of concentric leaf sheaths." [POC:Ramona_Walls]
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comment: The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots.
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subset: Musa
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synonym: "pseudotallo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
@@ -22992,6 +22991,27 @@ is_a: PO:0025496 ! multi-tissue plant structure
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created_by: https://orcid.org/0000-0002-6379-8932
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creation_date: 2024-02-14T18:01:56Z
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[Term]
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id: PO:0025627
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name: phloem parenchyma cell
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def: "A parenchyma cell (PO:0000074) that is associated with a sieve tube element (PO:0000289) and stores photosynthate." [PO:cooperl, Wikipedia:Phloem]
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subset: CL
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is_a: PO:0000074 ! parenchyma cell
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relationship: part_of PO:0005417 ! phloem
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created_by: https://orcid.org/0000-0002-6379-8932
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creation_date: 2025-11-05T22:18:27Z
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[Term]
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id: PO:0025628
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name: aggregate fruit
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def: "A fruit (PO:0009001) that develops from the merger of several plant ovaries (PO:0009072) that were separated in a single flower (PO:0009046)." [PO:cooperl, Wikipedia:Aggregate_fruit]
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comment: Examples of aggregate fruits include the raspberry (Rubus spp.), which is a collection drupelets.
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synonym: "aggregate of fruit (exact)" EXACT []
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xref: PO_GIT:702
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is_a: PO:0009001 ! fruit
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created_by: https://orcid.org/0000-0002-6379-8932
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creation_date: 2026-01-09T18:24:21Z
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[Term]
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id: PO:0028001
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name: OBSOLETE plant life cycle phase

‎po.owl‎

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xmlns:terms="http://purl.org/dc/terms/"
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xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
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<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/po.owl">
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2025-10-31/po.owl"/>
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<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2026-01-09/po.owl"/>
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<owl:imports rdf:resource="http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl"/>
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<owl:imports rdf:resource="http://purl.obolibrary.org/obo/po/imports/ro_import.owl"/>
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<terms:description>An ontology that describes plant anatomy, morphology, and growth and development in plants.</terms:description>
@@ -38266,7 +38266,7 @@
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#Poaceae"/>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#Rice"/>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#TraitNet"/>
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<rdfs:comment>A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘aggregate’, ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms.</rdfs:comment>
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<rdfs:comment>A fruit (PO:0009001) may contain additional plant structures (PO:0009011) that were part of a flower (PO:0009046) and mature along with the gynoecium, such as a receptacle (PO:0009064). A fruit may develop without fertilization in cases of parthenocarpy, apomixis, or other hormone-induced conditions and may not always contain seeds (PO:0009010). When annotating to fruit (PO:0009001) that are referred to as ‘multiple’, or ‘compound’, please annotate directly to the appropriate plant structure, such as receptacle, hypanthium (PO:0009065) or infructescence (PO:0006342). Fruits only occur in angiosperms.</rdfs:comment>
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<rdfs:label>fruit</rdfs:label>
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</owl:Class>
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<owl:Axiom>
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<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/PO_0025269"/>
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<obo:IAO_0000115>A cell which is a plant structure (PO:0009011).</obo:IAO_0000115>
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<oboInOwl:hasBroadSynonym>cell (broad)</oboInOwl:hasBroadSynonym>
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<oboInOwl:hasDbXref>GO:0005623</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>PO_GIT:56</oboInOwl:hasDbXref>
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<oboInOwl:hasExactSynonym>c&amp;#233lula vegetal (Spanish, exact)</oboInOwl:hasExactSynonym>
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<oboInOwl:hasExactSynonym>植物細胞 (Japanese, exact)</oboInOwl:hasExactSynonym>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#CL"/>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#TraitNet"/>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#reference"/>
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<rdfs:comment>Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell GO:0005623: &quot;The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope&quot;. GO:0009505. Definition of plant-type cell wall (GO:0009505): A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances, synonym; exact: cellulose and pectin-containing cell wall.</rdfs:comment>
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<rdfs:comment>Applies to cells that are living or dead at maturity (e.g., fiber cell or tracheid) and includes any external encapsulating structures (if present) such as the plasma membrane and the plant-type cell wall. Definition of cell CL:0000000: &quot;A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one)&quot;. Definition of plant-type cell wall (GO:0009505): &quot;A more or less rigid structure lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances.&quot; Exact synonym: cellulose and pectin-containing cell wall.</rdfs:comment>
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<rdfs:label>plant cell</rdfs:label>
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</owl:Class>
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<owl:Axiom>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/PO_0025248">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PO_0025269"/>
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<obo:IAO_0000115>A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths.</obo:IAO_0000115>
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<obo:IAO_0000115>A collective organ part structure that forms a cylindrical false stem composed of concentric leaf sheaths.</obo:IAO_0000115>
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<oboInOwl:created_by>rwalls</oboInOwl:created_by>
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<oboInOwl:creation_date>2010-12-30T03:53:09Z</oboInOwl:creation_date>
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<oboInOwl:hasDbXref>CO_125:0000046</oboInOwl:hasDbXref>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0025248"/>
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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
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<owl:annotatedTarget>A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths.</owl:annotatedTarget>
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<owl:annotatedTarget>A collective organ part structure that forms a cylindrical false stem composed of concentric leaf sheaths.</owl:annotatedTarget>
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<oboInOwl:hasDbXref>POC:Ramona_Walls</oboInOwl:hasDbXref>
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</owl:Axiom>
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<owl:Axiom>
@@ -75735,6 +75734,58 @@ these may not begin or end simultaneously. Not all seeds go through a seed dorma
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<!-- http://purl.obolibrary.org/obo/PO_0025627 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/PO_0025627">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PO_0000074"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0005417"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<obo:IAO_0000115>A parenchyma cell (PO:0000074) that is associated with a sieve tube element (PO:0000289) and stores photosynthate.</obo:IAO_0000115>
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<oboInOwl:created_by>https://orcid.org/0000-0002-6379-8932</oboInOwl:created_by>
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<oboInOwl:creation_date>2025-11-05T22:18:27Z</oboInOwl:creation_date>
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<oboInOwl:hasOBONamespace>plant_ontology</oboInOwl:hasOBONamespace>
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<oboInOwl:id>PO:0025627</oboInOwl:id>
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<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#CL"/>
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<rdfs:label>phloem parenchyma cell</rdfs:label>
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</owl:Class>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0025627"/>
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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
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<owl:annotatedTarget>A parenchyma cell (PO:0000074) that is associated with a sieve tube element (PO:0000289) and stores photosynthate.</owl:annotatedTarget>
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<oboInOwl:hasDbXref>PO:cooperl</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>Wikipedia:Phloem</oboInOwl:hasDbXref>
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</owl:Axiom>
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<!-- http://purl.obolibrary.org/obo/PO_0025628 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/PO_0025628">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PO_0009001"/>
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<obo:IAO_0000115>A fruit (PO:0009001) that develops from the merger of several plant ovaries (PO:0009072) that were separated in a single flower (PO:0009046).</obo:IAO_0000115>
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<oboInOwl:created_by>https://orcid.org/0000-0002-6379-8932</oboInOwl:created_by>
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<oboInOwl:creation_date>2026-01-09T18:24:21Z</oboInOwl:creation_date>
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<oboInOwl:hasDbXref>PO_GIT:702</oboInOwl:hasDbXref>
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<oboInOwl:hasExactSynonym>aggregate of fruit (exact)</oboInOwl:hasExactSynonym>
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<oboInOwl:hasOBONamespace>plant_ontology</oboInOwl:hasOBONamespace>
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<oboInOwl:id>PO:0025628</oboInOwl:id>
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<rdfs:comment>Examples of aggregate fruits include the raspberry (Rubus spp.), which is a collection drupelets.</rdfs:comment>
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<rdfs:label>aggregate fruit</rdfs:label>
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</owl:Class>
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<owl:Axiom>
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<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0025628"/>
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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
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<owl:annotatedTarget>A fruit (PO:0009001) that develops from the merger of several plant ovaries (PO:0009072) that were separated in a single flower (PO:0009046).</owl:annotatedTarget>
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<oboInOwl:hasDbXref>PO:cooperl</oboInOwl:hasDbXref>
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<oboInOwl:hasDbXref>Wikipedia:Aggregate_fruit</oboInOwl:hasDbXref>
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</owl:Axiom>
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<!-- http://purl.obolibrary.org/obo/PO_0028001 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/PO_0028001">

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