| layout | rule | |||||
|---|---|---|---|---|---|---|
| id | GORULE:0000001 | |||||
| title | GAF lines are parsed according to GAF 2.1 specifications | |||||
| type | filter | |||||
| fail_mode | hard | |||||
| status | implemented | |||||
| contact | go-quality@mailman.stanford.edu | |||||
| implementations |
|
Each line of a GAF file is checked that it generally conforms to the GAF 2.1 spec and some GO specific specifications. The GAF 2.1 spec is here: http://geneontology.org/page/go-annotation-file-gaf-format-21.
Qualifier, evidence, aspect and DB object columns must be within the list of allowed values (as per the spec).
Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).