This program is licensed under the GNU Lesser General Public License. See License.txt for more information.
Usage: kingdom-extraction sequences.fasta clean.csv contaminated.csv clean_output.fasta contaminated_output.fasta
In a nutshell:
git clone git@github.com:PalMuc/Kingdom-Extraction.git
cd Kingdom-Extraction
rvm use jruby
rm pkg/*
bundle install
rake install
rvm jruby gem install pkg/*.gem
Development of this program was supported by the Molecular Geo- and Palaeobiology Lab of the Department of Earth and Environmental Sciences and the initiative "Gleichstellung in Forschung und Lehre" of the Ludwig-Maximilians-University Munich (LMU).