Made notebooks run with updated config system

Author: Raphael Shirley

examples/cosmos_demo.ipynb

@@ -54,7 +54,7 @@
    "source": [
     "lephare_config = lp.default_cosmos_config\n",
     "# For useable science results you must use a denser redshift grid by commenting out the following line which will revert to the config dz of 0.01.\n",
-    "lephare_config['Z_STEP']= \".1,0.,7.\"\n",
+    "lephare_config['Z_STEP']= \"0.1,0.,7.\"\n",
     "nobj=100 # Increase to run on more objects. Set to -1 to run on all.\n",
     "\n",
     "lp.data_retrieval.get_auxiliary_data(keymap=lephare_config, additional_files=[\"examples/COSMOS.in\",\"examples/output.para\"])"
@@ -130,11 +130,16 @@
     "    nondetect_val=np.nan,\n",
     "    model=\"lephare.pkl\",\n",
     "    hdf5_groupname=\"\",\n",
-    "    lephare_config=lephare_config,\n",
+    "    **{f\"lephare.{k}\": v for k, v in lephare_config.items()},\n",
     "    bands=flux_cols,\n",
     "    err_bands=flux_err_cols,\n",
     "    ref_band=flux_cols[0],\n",
     "    do_prepare = True,\n",
+    "\n",
+    "    # These overwrite the config ZSTEP so must be set\n",
+    "    zmin=float(lephare_config['Z_STEP'].split(',')[1]),\n",
+    "    zmax=float(lephare_config['Z_STEP'].split(',')[2]),\n",
+    "    nzbins=1+float(lephare_config['Z_STEP'].split(',')[2])/float(lephare_config['Z_STEP'].split(',')[0]),\n",
     ")\n",
     "\n"
    ]
@@ -282,7 +287,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "rail",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -296,7 +301,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.13.2"
+   "version": "3.10.18"
   }
  },
  "nbformat": 4,

examples/small_demo.ipynb

@@ -68,7 +68,7 @@
    "outputs": [],
    "source": [
     "lephare_config_file = \"../tests/data/lsst.para\"\n",
-    "lephare_config = lp.read_config(lephare_config_file)\n",
+    "lephare_config = lp.keymap_to_string_dict(lp.read_config(lephare_config_file))\n",
     "\n",
     "lp.data_retrieval.get_auxiliary_data(keymap=lephare_config)"
    ]
@@ -92,7 +92,7 @@
     "    model=\"lephare.pkl\",\n",
     "    hdf5_groupname=\"\",\n",
     "    # Use a sparse redshift grid to speed up the notebook\n",
-    "    lephare_config=lp.keymap_to_string_dict(lephare_config),\n",
+    "    **{f\"lephare.{k}\": v for k, v in lephare_config.items()},\n",
     "    zmin=0,\n",
     "    zmax=5,\n",
     "    nzbins=51,\n",
@@ -201,7 +201,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "rail",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -215,7 +215,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.13.2"
+   "version": "3.10.18"
   }
  },
  "nbformat": 4,