research-agent-starter-kit/.gitignore at main · JonasLee12/research-agent-starter-kit · GitHub

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# Python
__pycache__/
*.pyc
*.pyo
.venv*/
*.egg-info/
dist/
build/

# Runtime data (private, do not publish)
.agent-runtime/
.agent-runtime/vector_index/
research-wiki/runtime-receipts/*.md
research-wiki/runtime-receipts/*.json
research-wiki/SESSION_EVENT_LOG.jsonl
research-wiki/system-audits/*
!research-wiki/system-audits/.gitkeep
research-wiki/retrieval-evals/*
!research-wiki/retrieval-evals/.gitkeep
research-wiki/skill-evals/Behavioural_Evidence_*
research-wiki/skill-evals/Skill_Eval_Run_*
research-wiki/material-passports/*
!research-wiki/material-passports/.gitkeep
research-wiki/pre-delivery-locks/*
!research-wiki/pre-delivery-locks/.gitkeep
research-wiki/skill-receipts/*
!research-wiki/skill-receipts/.gitkeep
knowledge-base/self-growing/health-checks/*
!knowledge-base/self-growing/health-checks/README.md
audit-reports/*.md
audit-reports/*.docx
audit-reports/**/*.md
audit-reports/**/*.docx
audit-reports/claude-reviews/*
!audit-reports/claude-reviews/.gitkeep

# Generated documents
*.docx
*.pdf
*.png

# Secrets and credentials
.env
.env.*
*.sqlite
*.sqlite3
*.sqlite3-shm
*.sqlite3-wal
*.db
*.key
*.pem
*.p12
*.pfx
*.log

# Zotero local database
Zotero/

# OS files
.DS_Store
Thumbs.db
*.swp
*~

# IDE
.vscode/
.idea/

# Local app/session state
.obsidian/workspace*
.obsidian/cache
.codex/
.mcp.json

# Sensitive or assessed project data
private/
raw-data/
participant-data/
transcripts/
recordings/
consent-forms/
ethics/raw/
canvas-screenshots/