All notable changes to muset will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
0.6.0 - 2025-11-05 (Latest Release)
--abundance-metricoption to choose between mean (default) or median for unitig abundance calculation--output-formatoption to output matrices as txt (default) or compressed tsv format-e/--generate-maximal-unitigs-linksflag to generate GGCAT CDBG with edges in BCALM2 formatgenerate_fofscript to automatically create file-of-files from a directory with paired-end support- Unit tests for aggregator interfaces and statistical metrics
- Separated interfaces for statistical metrics computation and matrix writing for better extensibility
- Skip k-mer matrix filtering when all filter parameters are zero (f=0, F=0, n=0, N=0) for improved performance
- Refactored unitig metric computation and matrix writing with cleaner separation of concerns
- Filtering step now directly aggregates matrices when no actual filtering is needed, reducing I/O overhead
0.5.1 - 2024-12-11
- Minor bug fixes and improvements
Latest stable release: v0.6.0