fix: update repository URLs for improved package access in documentation and configuration files

Adafede · Adafede · commit 3564c184648a · 2026-07-25T23:02:10.000+02:00
diff --git a/.github/workflows/external-use.yaml b/.github/workflows/external-use.yaml
@@ -90,7 +90,6 @@ jobs:
           "https://adafede.r-universe.dev",
           "https://taxonomicallyinformedannotation.r-universe.dev",
           "https://cran.r-universe.dev",
-          "https://r-lib.r-universe.dev",
           "https://bioc.r-universe.dev"
           )
           )
diff --git a/README.md b/README.md
@@ -61,8 +61,8 @@ install.packages(
   repos = c(
     "https://adafede.r-universe.dev",
     "https://taxonomicallyinformedannotation.r-universe.dev",
-    "https://bioconductor.org/packages/release/bioc",
-    "https://cloud.r-project.org"
+    "https://cran.r-universe.dev",
+    "https://bioc.r-universe.dev"
   )
 )
 ```
diff --git a/README.qmd b/README.qmd
@@ -68,8 +68,8 @@ install.packages(
   repos = c(
     "https://adafede.r-universe.dev",
     "https://taxonomicallyinformedannotation.r-universe.dev",
-    "https://bioconductor.org/packages/release/bioc",
-    "https://cloud.r-project.org"
+    "https://cran.r-universe.dev",
+    "https://bioc.r-universe.dev"
   )
 )
 ```
diff --git a/vignettes/cascade.qmd b/vignettes/cascade.qmd
@@ -65,8 +65,8 @@ install.packages(
   repos = c(
     "https://adafede.r-universe.dev",
     "https://taxonomicallyinformedannotation.r-universe.dev",
-    "https://bioconductor.org/packages/release/bioc",
-    "https://cloud.r-project.org"
+    "https://cran.r-universe.dev",
+    "https://bioc.r-universe.dev"
   )
 )
 ```

Original file line number	Diff line number	Diff line change
`@@ -90,7 +90,6 @@ jobs:`
`90`	`90`	`"https://adafede.r-universe.dev",`
`91`	`91`	`"https://taxonomicallyinformedannotation.r-universe.dev",`
`92`	`92`	`"https://cran.r-universe.dev",`
`93`		`- "https://r-lib.r-universe.dev",`
`94`	`93`	`"https://bioc.r-universe.dev"`
`95`	`94`	`)`
`96`	`95`	`)`
Original file line number	Diff line number	Diff line change
`@@ -61,8 +61,8 @@ install.packages(`
`61`	`61`	`repos = c(`
`62`	`62`	`"https://adafede.r-universe.dev",`
`63`	`63`	`"https://taxonomicallyinformedannotation.r-universe.dev",`
`64`		`- "https://bioconductor.org/packages/release/bioc",`
`65`		`- "https://cloud.r-project.org"`
	`64`	`+ "https://cran.r-universe.dev",`
	`65`	`+ "https://bioc.r-universe.dev"`
`66`	`66`	`)`
`67`	`67`	`)`
`68`	`68`	```
Original file line number	Diff line number	Diff line change
`@@ -68,8 +68,8 @@ install.packages(`
`68`	`68`	`repos = c(`
`69`	`69`	`"https://adafede.r-universe.dev",`
`70`	`70`	`"https://taxonomicallyinformedannotation.r-universe.dev",`
`71`		`- "https://bioconductor.org/packages/release/bioc",`
`72`		`- "https://cloud.r-project.org"`
	`71`	`+ "https://cran.r-universe.dev",`
	`72`	`+ "https://bioc.r-universe.dev"`
`73`	`73`	`)`
`74`	`74`	`)`
`75`	`75`	```
Original file line number	Diff line number	Diff line change
`@@ -65,8 +65,8 @@ install.packages(`
`65`	`65`	`repos = c(`
`66`	`66`	`"https://adafede.r-universe.dev",`
`67`	`67`	`"https://taxonomicallyinformedannotation.r-universe.dev",`
`68`		`- "https://bioconductor.org/packages/release/bioc",`
`69`		`- "https://cloud.r-project.org"`
	`68`	`+ "https://cran.r-universe.dev",`
	`69`	`+ "https://bioc.r-universe.dev"`
`70`	`70`	`)`
`71`	`71`	`)`
`72`	`72`	```