pyproject.toml

[project]
name = "vigil"
version = "1.0.0"
requires-python = ">=3.11"
description = "Workspace-scale adverse-event horizon scanner — Bayesian change-point + Poisson z-score + CUSUM ensemble with Benjamini–Hochberg FDR control."
readme = "README.md"
license = { text = "MIT" }
authors = [{ name = "Abhinav Gupta" }]
keywords = ["healthcare", "fhir", "clinical-ai", "pharmacovigilance", "surveillance", "bocpd", "cusum", "mcp", "a2a"]
classifiers = [
  "Development Status :: 4 - Beta",
  "Intended Audience :: Healthcare Industry",
  "License :: OSI Approved :: MIT License",
  "Programming Language :: Python :: 3.11",
  "Topic :: Scientific/Engineering :: Medical Science Apps.",
]

dependencies = [
  # Server / transport
  "fastmcp>=0.2.0",
  "fastapi>=0.110.0",
  "uvicorn[standard]>=0.27.0",
  # Data / schema
  "pydantic>=2.5.0",
  "pydantic-settings>=2.0",
  "structlog>=24.0.0",
  "httpx>=0.27.0",
  "tenacity>=8.2.0",
  "polars>=0.20.0",
  # Privacy / crypto
  "presidio-analyzer>=2.2.0",
  "cryptography>=42.0",
  # Narrative LLM (sole LLM call site)
  "litellm>=1.40.0",
  # Vigil statistics
  "scipy>=1.13.0",
  "numpy>=1.26.0",
]

[project.optional-dependencies]
dev = [
  "pytest>=8.0",
  "pytest-asyncio>=0.23",
  "pytest-cov>=4.1",
  "ruff>=0.4",
  "mypy>=1.8",
  "asgi-lifespan>=2.1",
]

[project.urls]
Homepage = "https://github.com/AbhinavGupta707/Vigil"
Repository = "https://github.com/AbhinavGupta707/Vigil"

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[tool.setuptools.packages.find]
include = ["vigil*", "shared*"]
exclude = ["tests*", "evals*", "fhir-bundles*", "data*", "scripts*", "docs*"]

[tool.ruff]
line-length = 100
target-version = "py311"
extend-exclude = ["docs", "scripts"]

[tool.ruff.lint]
select = ["E", "F", "I", "W"]
ignore = ["E501"]

[tool.mypy]
python_version = "3.11"
ignore_missing_imports = true
plugins = ["pydantic.mypy"]

[tool.pytest.ini_options]
asyncio_mode = "auto"
testpaths = ["vigil", "shared"]
norecursedirs = [".venv", "node_modules", "fhir-bundles", "data", "docs"]